Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC5.51□□□□□ -1.53
COL6A3P12111 SNHG14-210ENST00000546682 8842 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 USP3-201ENST00000268049 5311 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 FANCM-202ENST00000542564 6167 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 EI24P4-201ENST00000423683 1078 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 RPL34P6-201ENST00000432390 345 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 CBX1P1-201ENST00000440184 427 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 AC074255.1-201ENST00000511259 501 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 OR4A40P-201ENST00000533878 948 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.51□□□□□ -1.53
COL6A3P12111 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.51□□□□□ -1.53
COL6A3P12111 PECAM1-203ENST00000563924 6831 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 MT-RNR2-201ENST00000387347 1559 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 AKAP12-202ENST00000354675 6287 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 EP400NL-208ENST00000475841 7090 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A3P12111 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL6A3P12111 U3.3-201ENST00000362986 216 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 RN7SKP151-201ENST00000410230 316 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 AC097721.1-201ENST00000427150 1253 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 AL022237.1-201ENST00000446663 358 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A3P12111 AC016550.3-201ENST00000515706 767 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A3P12111 AC010327.2-201ENST00000587647 488 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 KCNB1-201ENST00000371741 11879 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 GLRA2-201ENST00000218075 3216 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 RNA5SP317-201ENST00000410176 116 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 RNA5SP251-201ENST00000410614 137 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 RNA5SP311-201ENST00000411290 116 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A3P12111 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A3P12111 RNA5SP315-201ENST00000516340 116 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 RNA5SP312-201ENST00000517068 116 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 AP005119.2-201ENST00000579735 1105 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A3P12111 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A3P12111 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL6A3P12111 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 MYH2-201ENST00000245503 6339 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 TCP11X1-202ENST00000622971 1372 ntBASIC5.5□□□□□ -1.53
COL6A3P12111 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A3P12111 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL6A3P12111 WWC2-205ENST00000504005 5247 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A3P12111 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A3P12111 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 AC012313.8-201ENST00000595059 5402 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC5.49□□□□□ -1.53
COL6A3P12111 AC011369.2-201ENST00000624423 1567 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.49□□□□□ -1.53
COL6A3P12111 AK3P4-201ENST00000504283 583 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A3P12111 AC007494.1-201ENST00000562293 760 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 AP005901.4-201ENST00000577336 569 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A3P12111 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A3P12111 ERG-201ENST00000288319 4919 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.49□□□□□ -1.53
COL6A3P12111 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A3P12111 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 AC092692.1-201ENST00000623625 2595 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 TRHDE-201ENST00000261180 10733 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 RNA5SP191-201ENST00000362585 102 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.49□□□□□ -1.53
COL6A3P12111 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A3P12111 AC114755.5-201ENST00000447760 831 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 AL451063.1-201ENST00000450164 1133 ntBASIC5.49□□□□□ -1.53
COL6A3P12111 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A3P12111 ZNF592-203ENST00000560079 8131 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A3P12111 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A3P12111 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.49□□□□□ -1.53
COL6A3P12111 CYFIP2-209ENST00000521420 6370 ntTSL 2 BASIC5.49□□□□□ -1.53
COL6A3P12111 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms