Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL136455.1-201ENST00000441083 1240 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.51□□□□□ -1.53
PKNOX1P55347 CST12P-201ENST00000457644 362 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 AC068228.1-201ENST00000461723 211 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 PSAT1P4-201ENST00000466500 526 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.51□□□□□ -1.53
PKNOX1P55347 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.51□□□□□ -1.53
PKNOX1P55347 RPS17P15-201ENST00000475609 349 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 AC073610.1-201ENST00000489971 396 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 LDHAP1-201ENST00000509421 992 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 RNA5SP340-201ENST00000517132 107 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.51□□□□□ -1.53
PKNOX1P55347 AC122688.1-201ENST00000541494 223 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.51□□□□□ -1.53
PKNOX1P55347 AL845552.1-201ENST00000556820 323 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.51□□□□□ -1.53
PKNOX1P55347 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.51□□□□□ -1.53
PKNOX1P55347 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.51□□□□□ -1.53
PKNOX1P55347 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.51□□□□□ -1.53
PKNOX1P55347 AL022394.1-201ENST00000606979 292 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.51□□□□□ -1.53
PKNOX1P55347 AL139124.1-201ENST00000609123 421 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 AP001052.1-201ENST00000626421 99 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.51□□□□□ -1.53
PKNOX1P55347 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
PKNOX1P55347 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.51□□□□□ -1.53
PKNOX1P55347 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 AC002525.1-201ENST00000624392 1622 ntBASIC5.51□□□□□ -1.53
PKNOX1P55347 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PKNOX1P55347 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PKNOX1P55347 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PKNOX1P55347 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 RNA5SP232-201ENST00000364144 119 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 RNA5SP500-201ENST00000364486 119 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 U3.28-201ENST00000391249 210 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.5□□□□□ -1.53
PKNOX1P55347 MRPL53P1-201ENST00000414323 319 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 AK4P4-201ENST00000419465 646 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 NANOGP9-201ENST00000439890 892 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 LSM3P4-201ENST00000502948 309 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
PKNOX1P55347 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.5□□□□□ -1.53
PKNOX1P55347 PMS2P3-207ENST00000529061 717 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.5□□□□□ -1.53
PKNOX1P55347 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.5□□□□□ -1.53
PKNOX1P55347 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.5□□□□□ -1.53
PKNOX1P55347 AC002310.3-201ENST00000569728 723 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 AC138207.8-204ENST00000579588 527 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.5□□□□□ -1.53
PKNOX1P55347 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 AC002069.2-201ENST00000603580 883 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 FAM27E4-201ENST00000605259 342 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 AL162574.1-201ENST00000615702 950 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 AC244517.3-201ENST00000616254 1235 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 AC021766.1-201ENST00000624404 741 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.5□□□□□ -1.53
PKNOX1P55347 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PKNOX1P55347 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
PKNOX1P55347 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PKNOX1P55347 MAPK10-338ENST00000641647 3362 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 AC097063.1-201ENST00000426714 1797 ntBASIC5.5□□□□□ -1.53
PKNOX1P55347 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PKNOX1P55347 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PKNOX1P55347 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PKNOX1P55347 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.49□□□□□ -1.53
PKNOX1P55347 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
PKNOX1P55347 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
PKNOX1P55347 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
PKNOX1P55347 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PKNOX1P55347 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms