Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SYNJ1-202ENST00000382491 6958 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 APOL2-202ENST00000358502 2551 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 SH2D4B-202ENST00000339284 3983 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
COL9A1P20849 LINC01278-205ENST00000609401 2886 ntTSL 2 BASIC8.33□□□□□ -1.08
COL9A1P20849 DCAF1-203ENST00000504652 5951 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC090771.1-201ENST00000585803 1618 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 OGDH-206ENST00000447398 3474 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 TBC1D14-206ENST00000446947 4021 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
COL9A1P20849 RN7SKP118-201ENST00000364331 330 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 Y_RNA.381-201ENST00000365666 102 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 SNORD3H-201ENST00000384486 214 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
COL9A1P20849 GAPDHP42-201ENST00000406848 981 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 SNORA11C-201ENST00000408532 129 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 NIPA2P1-201ENST00000426223 976 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 AL627308.1-201ENST00000435693 821 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AL606534.2-201ENST00000436756 624 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 AL049734.2-201ENST00000441066 616 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 RPL17P49-201ENST00000443728 411 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC239798.3-201ENST00000454459 408 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 HSPE1P22-201ENST00000456856 327 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 MTND4P17-201ENST00000470444 350 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 ADH7-205ENST00000482593 1420 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 RPL21P42-201ENST00000488408 464 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AC106872.3-201ENST00000495104 446 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 RPL38P4-201ENST00000502376 214 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 RAI14-220ENST00000512629 2941 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 AC108043.1-201ENST00000512696 574 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 SMURF2P1-201ENST00000514992 481 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 RNA5SP135-201ENST00000517019 125 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 RNU6-1261P-201ENST00000517194 104 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC8.33□□□□□ -1.08
COL9A1P20849 OR5D2P-201ENST00000524390 911 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 PCNAP4-201ENST00000532690 730 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 BMS1P2-202ENST00000532854 1858 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 CASP1-216ENST00000534497 825 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC079384.1-201ENST00000548506 600 ntTSL 4 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC133485.3-201ENST00000562604 262 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC138907.3-201ENST00000563937 262 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC138869.3-201ENST00000563960 2486 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 AC138869.2-201ENST00000569850 262 ntTSL 3 BASIC8.33□□□□□ -1.08
COL9A1P20849 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 TPMTP1-201ENST00000592307 737 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 VDAC1P5-201ENST00000603132 844 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AC097468.3-201ENST00000607956 456 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 AC106782.6-201ENST00000611264 512 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 LINC01359-205ENST00000634604 1050 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 SORBS2-206ENST00000393528 3043 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 ZNF33A-208ENST00000628825 2854 ntAPPRIS ALT2 TSL 2 BASIC8.33□□□□□ -1.08
COL9A1P20849 CDRT1-204ENST00000395906 2571 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 AL354993.1-201ENST00000436286 3280 ntTSL 4 BASIC8.33□□□□□ -1.08
COL9A1P20849 STXBP5L-206ENST00000492541 3114 ntTSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 PIWIL3-205ENST00000616349 3111 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 KIAA0040-201ENST00000423313 4564 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 NVL-203ENST00000391875 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 ARHGEF11-202ENST00000368194 6889 ntAPPRIS P4 TSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
COL9A1P20849 NFYC-203ENST00000372652 2363 ntTSL 2 BASIC8.33□□□□□ -1.08
COL9A1P20849 MAGEE2-201ENST00000373359 2249 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
COL9A1P20849 DCAF1-202ENST00000423656 5946 ntAPPRIS P4 TSL 5 BASIC8.33□□□□□ -1.08
COL9A1P20849 AC008522.1-201ENST00000639479 2906 ntBASIC8.33□□□□□ -1.08
COL9A1P20849 TRIM55-204ENST00000353317 2624 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
COL9A1P20849 UBXN10-201ENST00000375099 5571 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 ZNF189-204ENST00000615466 2316 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 STX18-AS1-206ENST00000608184 3047 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 SYT2-202ENST00000367268 7598 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 MAPK10-255ENST00000641020 2412 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 ARMC3-201ENST00000298032 2811 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 DIAPH3-203ENST00000400319 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 PPP2R2A-202ENST00000380737 3940 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 ARHGEF9-201ENST00000253401 5413 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 MTCO1P14-201ENST00000441695 1559 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC8.32□□□□□ -1.08
COL9A1P20849 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC8.32□□□□□ -1.08
COL9A1P20849 SLC8A1-201ENST00000332839 2922 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 RAP2C-205ENST00000620646 3341 ntTSL 5 BASIC8.32□□□□□ -1.08
COL9A1P20849 MCTP1-204ENST00000505078 2629 ntTSL 2 BASIC8.32□□□□□ -1.08
COL9A1P20849 KIAA1958-201ENST00000337530 11775 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 OR9K1P-201ENST00000326513 941 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RNU6-1120P-201ENST00000362988 108 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RNA5SP463-201ENST00000363030 120 ntBASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms