Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC034229.2-201ENST00000566945 2508 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 ZNF969P-201ENST00000510345 2341 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 TENM2-207ENST00000520394 8034 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 SORBS2-209ENST00000418609 5529 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A3P12111 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL6A3P12111 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC5.53□□□□□ -1.52
COL6A3P12111 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL6A3P12111 AP002991.2-201ENST00000623807 2801 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 RPS23P2-201ENST00000463671 415 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A3P12111 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A3P12111 AC130304.1-201ENST00000622942 2385 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.52□□□□□ -1.52
COL6A3P12111 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.52
COL6A3P12111 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 COL4A6-203ENST00000394872 6750 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A3P12111 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 GIGYF2-203ENST00000409451 5937 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 SPATA31C1-201ENST00000420021 3895 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 NUDT19P3-201ENST00000404698 555 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.52□□□□□ -1.53
COL6A3P12111 ZYXP1-201ENST00000617638 118 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 AC009831.5-201ENST00000624000 3189 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL6A3P12111 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL6A3P12111 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC5.52□□□□□ -1.53
COL6A3P12111 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
COL6A3P12111 LINC01630-201ENST00000435144 5489 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A3P12111 ITGB6-211ENST00000620391 4401 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A3P12111 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A3P12111 SNORD113.2-201ENST00000364166 89 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
COL6A3P12111 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A3P12111 AC093840.1-201ENST00000511599 336 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 MTCO1P35-201ENST00000515270 228 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.52□□□□□ -1.53
COL6A3P12111 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.52□□□□□ -1.53
COL6A3P12111 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A3P12111 CORO2A-201ENST00000343933 5635 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 AC232271.1-201ENST00000602455 2715 ntBASIC5.52□□□□□ -1.53
COL6A3P12111 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 DNMBP-204ENST00000636706 5437 ntTSL 2 BASIC5.52□□□□□ -1.53
COL6A3P12111 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A3P12111 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A3P12111 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 DDHD1-203ENST00000395606 12769 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
COL6A3P12111 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 AC073365.1-203ENST00000641055 1992 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 RNA5SP372-201ENST00000390836 115 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 RPL21P108-201ENST00000413857 481 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 HSFY1P1-201ENST00000423928 1178 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.51□□□□□ -1.53
COL6A3P12111 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.51□□□□□ -1.53
COL6A3P12111 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.51□□□□□ -1.53
COL6A3P12111 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.51□□□□□ -1.53
COL6A3P12111 AC005341.1-201ENST00000571086 708 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 AP005403.1-201ENST00000579720 229 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 MIR3939-201ENST00000582614 106 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 RUNX1T1-252ENST00000617740 7627 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 PDE6A-201ENST00000255266 5642 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 MYLK-205ENST00000360772 10027 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 SLC33A1-202ENST00000392845 9217 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC5.51□□□□□ -1.53
COL6A3P12111 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL6A3P12111 ATG4AP1-201ENST00000416893 538 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 CDY14P-201ENST00000431260 1014 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 CDY12P-201ENST00000440679 1015 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 CDY13P-201ENST00000445813 1015 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 CDY23P-201ENST00000451661 1014 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 AC112187.1-201ENST00000455837 479 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 AC106806.2-201ENST00000509365 500 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 TOMM22P4-201ENST00000511318 336 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.51□□□□□ -1.53
COL6A3P12111 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 AL121890.3-201ENST00000618494 516 ntBASIC5.51□□□□□ -1.53
COL6A3P12111 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 PCSK1-201ENST00000311106 5086 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.51□□□□□ -1.53
COL6A3P12111 AFF1-202ENST00000395146 9285 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
COL6A3P12111 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC5.51□□□□□ -1.53
COL6A3P12111 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A3P12111 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A3P12111 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms