Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.37□□□□□ -1.55
FOXA1P55317 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.37□□□□□ -1.55
FOXA1P55317 AC130364.2-201ENST00000528639 604 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.37□□□□□ -1.55
FOXA1P55317 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
FOXA1P55317 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.37□□□□□ -1.55
FOXA1P55317 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.37□□□□□ -1.55
FOXA1P55317 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.37□□□□□ -1.55
FOXA1P55317 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.37□□□□□ -1.55
FOXA1P55317 AP001052.1-201ENST00000626421 99 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
FOXA1P55317 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 IFIT1P1-201ENST00000400497 1449 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
FOXA1P55317 AL162456.1-201ENST00000634535 2006 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
FOXA1P55317 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.36□□□□□ -1.55
FOXA1P55317 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
FOXA1P55317 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
FOXA1P55317 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
FOXA1P55317 SRRM1P3-201ENST00000426911 2678 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
FOXA1P55317 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
FOXA1P55317 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 AL035660.1-201ENST00000422041 222 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.36□□□□□ -1.55
FOXA1P55317 AL022331.1-201ENST00000429025 477 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 AC069154.1-201ENST00000432914 542 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 RPL5P25-201ENST00000441148 775 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 RN7SL741P-201ENST00000482473 289 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.36□□□□□ -1.55
FOXA1P55317 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.36□□□□□ -1.55
FOXA1P55317 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.36□□□□□ -1.55
FOXA1P55317 HMGB1P42-201ENST00000532126 553 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.36□□□□□ -1.55
FOXA1P55317 AC108738.1-201ENST00000603703 237 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 RN7SL544P-201ENST00000617232 284 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 AC005899.7-201ENST00000618199 588 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 RN7SL763P-201ENST00000620922 284 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 AC073592.6-201ENST00000624271 415 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
FOXA1P55317 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.36□□□□□ -1.55
FOXA1P55317 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 MT-RNR2-201ENST00000387347 1559 ntBASIC5.36□□□□□ -1.55
FOXA1P55317 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
FOXA1P55317 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.36□□□□□ -1.55
FOXA1P55317 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.36□□□□□ -1.55
FOXA1P55317 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.36□□□□□ -1.55
FOXA1P55317 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
FOXA1P55317 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.35□□□□□ -1.55
FOXA1P55317 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
FOXA1P55317 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
FOXA1P55317 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.35□□□□□ -1.55
FOXA1P55317 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 NEPNP-201ENST00000404786 1371 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 OR7E101P-201ENST00000400428 513 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 SNORA11.5-201ENST00000408163 128 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 HYALP1-201ENST00000417674 1279 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 MRPS21P2-201ENST00000424704 264 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.35□□□□□ -1.55
FOXA1P55317 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.35□□□□□ -1.55
FOXA1P55317 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.35□□□□□ -1.55
FOXA1P55317 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.35□□□□□ -1.55
FOXA1P55317 HLA-DPA3-207ENST00000454398 229 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.35□□□□□ -1.55
FOXA1P55317 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
FOXA1P55317 AC122718.2-201ENST00000505325 591 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.35□□□□□ -1.55
FOXA1P55317 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.35□□□□□ -1.55
FOXA1P55317 AP004609.2-201ENST00000532177 190 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 OR4A43P-201ENST00000532938 908 ntBASIC5.35□□□□□ -1.55
FOXA1P55317 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.35□□□□□ -1.55
FOXA1P55317 AC092121.1-201ENST00000569452 202 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms