Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CIITAP33076 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.53□□□□□ -1.36
CIITAP33076 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.53□□□□□ -1.36
CIITAP33076 OR2W4P-201ENST00000406496 926 ntBASIC6.53□□□□□ -1.36
CIITAP33076 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC6.53□□□□□ -1.36
CIITAP33076 AC017078.1-201ENST00000416146 368 ntBASIC6.53□□□□□ -1.36
CIITAP33076 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.53□□□□□ -1.36
CIITAP33076 NIFKP3-201ENST00000417799 865 ntBASIC6.53□□□□□ -1.36
CIITAP33076 CRIP1P1-201ENST00000427567 185 ntBASIC6.53□□□□□ -1.36
CIITAP33076 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.53□□□□□ -1.36
CIITAP33076 HMGB3P24-201ENST00000433260 622 ntBASIC6.53□□□□□ -1.36
CIITAP33076 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.53□□□□□ -1.36
CIITAP33076 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.53□□□□□ -1.36
CIITAP33076 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.53□□□□□ -1.36
CIITAP33076 H3F3BP1-201ENST00000440551 403 ntBASIC6.53□□□□□ -1.36
CIITAP33076 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.53□□□□□ -1.36
CIITAP33076 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.53□□□□□ -1.36
CIITAP33076 RPL31P15-201ENST00000449770 338 ntBASIC6.53□□□□□ -1.36
CIITAP33076 MTND3P4-201ENST00000453537 303 ntBASIC6.53□□□□□ -1.36
CIITAP33076 TPRKBP1-201ENST00000456243 481 ntBASIC6.53□□□□□ -1.36
CIITAP33076 OR2A3P-201ENST00000493774 953 ntBASIC6.53□□□□□ -1.36
CIITAP33076 CYCSP22-201ENST00000517555 339 ntBASIC6.53□□□□□ -1.36
CIITAP33076 AC067805.1-201ENST00000559344 470 ntBASIC6.53□□□□□ -1.36
CIITAP33076 AC026124.2-201ENST00000621847 656 ntBASIC6.53□□□□□ -1.36
CIITAP33076 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
CIITAP33076 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CIITAP33076 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.53□□□□□ -1.36
CIITAP33076 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.53□□□□□ -1.36
CIITAP33076 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.53□□□□□ -1.36
CIITAP33076 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.53□□□□□ -1.36
CIITAP33076 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CIITAP33076 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
CIITAP33076 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.52□□□□□ -1.36
CIITAP33076 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.52□□□□□ -1.37
CIITAP33076 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
CIITAP33076 SNORA64.1-201ENST00000362600 132 ntBASIC6.52□□□□□ -1.37
CIITAP33076 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 SNORA40.4-201ENST00000390971 128 ntBASIC6.52□□□□□ -1.37
CIITAP33076 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.52□□□□□ -1.37
CIITAP33076 RN7SKP279-201ENST00000411383 298 ntBASIC6.52□□□□□ -1.37
CIITAP33076 BMS1P17-202ENST00000416720 316 ntBASIC6.52□□□□□ -1.37
CIITAP33076 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 NENFP1-201ENST00000419476 466 ntBASIC6.52□□□□□ -1.37
CIITAP33076 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 BX119321.1-201ENST00000428912 797 ntBASIC6.52□□□□□ -1.37
CIITAP33076 OR7E116P-201ENST00000448529 957 ntBASIC6.52□□□□□ -1.37
CIITAP33076 NXT1P1-201ENST00000458481 316 ntBASIC6.52□□□□□ -1.37
CIITAP33076 RPL32P33-201ENST00000487023 394 ntBASIC6.52□□□□□ -1.37
CIITAP33076 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.52□□□□□ -1.37
CIITAP33076 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.52□□□□□ -1.37
CIITAP33076 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC6.52□□□□□ -1.37
CIITAP33076 IGKV3D-34-201ENST00000522638 302 ntBASIC6.52□□□□□ -1.37
CIITAP33076 HMGB1P42-201ENST00000532126 553 ntBASIC6.52□□□□□ -1.37
CIITAP33076 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC6.52□□□□□ -1.37
CIITAP33076 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC6.52□□□□□ -1.37
CIITAP33076 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.52□□□□□ -1.37
CIITAP33076 AC010547.6-201ENST00000571789 193 ntBASIC6.52□□□□□ -1.37
CIITAP33076 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.52□□□□□ -1.37
CIITAP33076 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 MRO-208ENST00000588444 866 ntTSL 3 BASIC6.52□□□□□ -1.37
CIITAP33076 AC009303.3-201ENST00000591103 736 ntBASIC6.52□□□□□ -1.37
CIITAP33076 NANOGP3-201ENST00000605855 286 ntBASIC6.52□□□□□ -1.37
CIITAP33076 RNA5SP440-201ENST00000612665 119 ntBASIC6.52□□□□□ -1.37
CIITAP33076 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.52□□□□□ -1.37
CIITAP33076 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 AC087565.3-203ENST00000641018 837 ntBASIC6.52□□□□□ -1.37
CIITAP33076 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
CIITAP33076 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.52□□□□□ -1.37
CIITAP33076 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC6.52□□□□□ -1.37
CIITAP33076 IMMTP1-201ENST00000435590 2219 ntBASIC6.52□□□□□ -1.37
CIITAP33076 AC137056.2-201ENST00000624055 1958 ntBASIC6.51□□□□□ -1.37
CIITAP33076 AP004607.3-201ENST00000530354 3915 ntBASIC6.51□□□□□ -1.37
CIITAP33076 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CIITAP33076 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CIITAP33076 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CIITAP33076 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CIITAP33076 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.51□□□□□ -1.37
CIITAP33076 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.51□□□□□ -1.37
CIITAP33076 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CIITAP33076 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.51□□□□□ -1.37
CIITAP33076 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
CIITAP33076 SDHDP6-201ENST00000414693 480 ntBASIC6.51□□□□□ -1.37
CIITAP33076 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms