Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ZDHHC20P3-201ENST00000531576 336 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AC022880.1-201ENST00000534017 973 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC5.61□□□□□ -1.51
HOXA3O43365 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 AC016144.1-201ENST00000548175 1087 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 DPPA3P2-201ENST00000553589 478 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 OR11H3P-201ENST00000554547 982 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC102941.1-201ENST00000567616 1537 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC009779.8-202ENST00000607990 932 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 AL139418.1-201ENST00000613613 177 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 CR381670.1-201ENST00000624291 1693 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 TSHZ2-205ENST00000626626 670 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HOXA3O43365 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 AL359263.1-201ENST00000441188 2796 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 AP002800.1-201ENST00000624982 2225 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 EPS15P1-202ENST00000459691 2071 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
HOXA3O43365 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 MKI67P1-201ENST00000604297 1460 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 AC092104.1-201ENST00000497346 1441 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 SAMMSON-222ENST00000641901 2727 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
HOXA3O43365 RNA5SP382-201ENST00000363355 112 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RN7SKP130-201ENST00000364924 301 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RNU4-31P-201ENST00000384211 141 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 Y_RNA.559-201ENST00000384686 107 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AC006511.2-201ENST00000388966 660 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RNU6-757P-201ENST00000410334 100 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RNA5SP155-201ENST00000411154 129 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 AF274854.1-201ENST00000413236 615 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 RPSAP60-201ENST00000415403 880 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AL590806.1-201ENST00000415818 853 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 AHCYP8-201ENST00000425108 209 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RPL5P6-201ENST00000425640 886 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 MTCYBP39-201ENST00000437562 491 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 MTCYBP3-201ENST00000445588 1137 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AL606662.1-201ENST00000445763 553 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RPS18P1-201ENST00000447840 458 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 PRDX1P1-201ENST00000449329 596 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC096922.1-201ENST00000461635 651 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 AP005202.1-201ENST00000489915 867 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC093878.1-201ENST00000515630 432 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 AP001804.1-201ENST00000526868 919 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 AKIRIN1P1-201ENST00000547384 544 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 PPIAP6-201ENST00000557078 499 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms