Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL627230.1-201ENST00000613077 211 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 AL591926.8-201ENST00000616876 211 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.72□□□□□ -1.33
BRCA1P38398 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.72□□□□□ -1.33
BRCA1P38398 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.72□□□□□ -1.33
BRCA1P38398 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
BRCA1P38398 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.72□□□□□ -1.33
BRCA1P38398 NLRP3P1-201ENST00000622303 1785 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 AC092724.1-201ENST00000624623 3397 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
BRCA1P38398 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
BRCA1P38398 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.71□□□□□ -1.33
BRCA1P38398 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
BRCA1P38398 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.71□□□□□ -1.33
BRCA1P38398 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
BRCA1P38398 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
BRCA1P38398 RN7SKP6-201ENST00000364795 319 ntBASIC6.71□□□□□ -1.34
BRCA1P38398 AL049693.1-201ENST00000402760 611 ntBASIC6.71□□□□□ -1.34
BRCA1P38398 COX6CP17-201ENST00000421389 185 ntBASIC6.71□□□□□ -1.34
BRCA1P38398 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.71□□□□□ -1.34
BRCA1P38398 AC016027.5-201ENST00000427227 210 ntBASIC6.71□□□□□ -1.34
BRCA1P38398 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.71□□□□□ -1.34
BRCA1P38398 AK3P5-201ENST00000432033 519 ntBASIC6.71□□□□□ -1.34
BRCA1P38398 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.71□□□□□ -1.34
BRCA1P38398 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC6.71□□□□□ -1.34
BRCA1P38398 RNA5SP373-201ENST00000517271 95 ntBASIC6.71□□□□□ -1.34
BRCA1P38398 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC6.71□□□□□ -1.34
BRCA1P38398 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.71□□□□□ -1.34
BRCA1P38398 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.71□□□□□ -1.34
BRCA1P38398 AL031320.1-201ENST00000604177 357 ntBASIC6.71□□□□□ -1.34
BRCA1P38398 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
BRCA1P38398 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
BRCA1P38398 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
BRCA1P38398 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
BRCA1P38398 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
BRCA1P38398 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
BRCA1P38398 RPSAP35-201ENST00000413753 818 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC6.7□□□□□ -1.34
BRCA1P38398 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.7□□□□□ -1.34
BRCA1P38398 RN7SL817P-201ENST00000480777 288 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.7□□□□□ -1.34
BRCA1P38398 RPL23AP72-201ENST00000492447 435 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.7□□□□□ -1.34
BRCA1P38398 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC6.7□□□□□ -1.34
BRCA1P38398 AC104687.2-201ENST00000604442 342 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.7□□□□□ -1.34
BRCA1P38398 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.7□□□□□ -1.34
BRCA1P38398 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC6.7□□□□□ -1.34
BRCA1P38398 AC092070.2-203ENST00000598377 3644 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 CAST-222ENST00000508579 1758 ntTSL 2 BASIC6.7□□□□□ -1.34
BRCA1P38398 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 CDY5P-201ENST00000411487 1580 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 CDY9P-201ENST00000451397 1580 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
BRCA1P38398 OR5M12P-201ENST00000423388 929 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.7□□□□□ -1.34
BRCA1P38398 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.7□□□□□ -1.34
BRCA1P38398 snoU13.20-201ENST00000459180 104 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 AC091153.1-201ENST00000466297 402 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 GTF2F2P1-201ENST00000511083 675 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.7□□□□□ -1.34
BRCA1P38398 RN7SKP98-201ENST00000517070 156 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 AC134349.2-201ENST00000535136 910 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.7□□□□□ -1.34
BRCA1P38398 AC006213.6-201ENST00000623722 4179 ntBASIC6.7□□□□□ -1.34
BRCA1P38398 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC6.7□□□□□ -1.34
BRCA1P38398 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
BRCA1P38398 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
BRCA1P38398 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.7□□□□□ -1.34
BRCA1P38398 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms