Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.88□□□□□ -1.31
COL5A3P25940 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.88□□□□□ -1.31
COL5A3P25940 SCARNA16.4-201ENST00000516956 187 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC134349.2-201ENST00000535136 910 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.88□□□□□ -1.31
COL5A3P25940 AC011447.4-201ENST00000587562 111 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.88□□□□□ -1.31
COL5A3P25940 AL353729.2-201ENST00000605859 1249 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC093799.2-201ENST00000610062 578 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC112694.2-201ENST00000623697 768 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.88□□□□□ -1.31
COL5A3P25940 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.88□□□□□ -1.31
COL5A3P25940 AC092747.4-201ENST00000620519 1861 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 OR9K1P-202ENST00000641111 3217 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC013268.3-201ENST00000262716 2324 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC6.88□□□□□ -1.31
COL5A3P25940 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
COL5A3P25940 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC6.88□□□□□ -1.31
COL5A3P25940 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.88□□□□□ -1.31
COL5A3P25940 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.87□□□□□ -1.31
COL5A3P25940 AC092647.3-201ENST00000443044 633 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.87□□□□□ -1.31
COL5A3P25940 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 RN7SL346P-201ENST00000491561 294 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 AC004980.4-201ENST00000513375 203 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 AC009117.1-201ENST00000563948 554 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.87□□□□□ -1.31
COL5A3P25940 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.87□□□□□ -1.31
COL5A3P25940 AL133481.2-203ENST00000607558 139 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 AP005432.2-201ENST00000608162 586 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.87□□□□□ -1.31
COL5A3P25940 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
COL5A3P25940 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC6.87□□□□□ -1.31
COL5A3P25940 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
COL5A3P25940 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.87□□□□□ -1.31
COL5A3P25940 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.87□□□□□ -1.31
COL5A3P25940 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC6.87□□□□□ -1.31
COL5A3P25940 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.87□□□□□ -1.31
COL5A3P25940 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC6.87□□□□□ -1.31
COL5A3P25940 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 Z92846.1-201ENST00000456203 268 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 RN7SL738P-201ENST00000470264 297 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 OR51K1P-201ENST00000510214 950 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 GTF2F2P1-201ENST00000511083 675 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 OR51A1P-201ENST00000511110 946 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 AP004607.2-201ENST00000533949 322 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 AL022394.1-201ENST00000606979 292 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 MTCO1P1-201ENST00000624263 1081 ntBASIC6.87□□□□□ -1.31
COL5A3P25940 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.87□□□□□ -1.31
COL5A3P25940 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL5A3P25940 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.86□□□□□ -1.31
COL5A3P25940 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL5A3P25940 HSPA8P14-201ENST00000552265 1805 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 AC022819.1-201ENST00000563495 3910 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL5A3P25940 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL5A3P25940 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
COL5A3P25940 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL5A3P25940 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL5A3P25940 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
COL5A3P25940 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.86□□□□□ -1.31
COL5A3P25940 RPS17P17-201ENST00000419392 409 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.86□□□□□ -1.31
COL5A3P25940 AL772161.1-201ENST00000439130 476 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.86□□□□□ -1.31
COL5A3P25940 AC002075.1-201ENST00000457396 676 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 AC096741.1-201ENST00000472250 846 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 ATP5LP5-201ENST00000483050 299 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.86□□□□□ -1.31
COL5A3P25940 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.86□□□□□ -1.31
COL5A3P25940 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.86□□□□□ -1.31
COL5A3P25940 AC005341.1-201ENST00000571086 708 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.86□□□□□ -1.31
COL5A3P25940 AC060766.1-201ENST00000590824 627 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 AC234771.5-201ENST00000600161 514 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL5A3P25940 AL353662.3-201ENST00000625131 237 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 AL353796.1-201ENST00000561542 3241 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 AL449283.1-201ENST00000602631 3403 ntBASIC6.86□□□□□ -1.31
COL5A3P25940 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms