Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 RARRES2P10-201ENST00000564312 460 ntBASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 Z99916.2-201ENST00000604037 246 ntBASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN16Q9Y5I7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 C1QL1P1-201ENST00000568105 661 ntBASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CLDN16Q9Y5I7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
CLDN16Q9Y5I7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN16Q9Y5I7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN16Q9Y5I7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
CLDN16Q9Y5I7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN16Q9Y5I7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN16Q9Y5I7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 AC008550.1-201ENST00000511500 884 ntBASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 AC004264.1-201ENST00000608354 794 ntBASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 AFG3L1P-217ENST00000557444 2447 ntBASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CLDN16Q9Y5I7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 TREX1-205ENST00000625293 1783 ntBASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN16Q9Y5I7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN16Q9Y5I7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN16Q9Y5I7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms