Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 SLC25A1P4-201ENST00000567977 778 ntBASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 ABBA01031674.1-201ENST00000635145 728 ntBASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC37.48■■■■□ 3.59
SHROOM4Q9ULL8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 YBX1P2-201ENST00000489612 999 ntBASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 SMG8-203ENST00000578922 2178 ntBASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
SHROOM4Q9ULL8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 FAM86EP-206ENST00000510506 987 ntBASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
SHROOM4Q9ULL8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC37.45■■■■□ 3.59
SHROOM4Q9ULL8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC37.44■■■■□ 3.58
SHROOM4Q9ULL8 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC37.44■■■■□ 3.58
SHROOM4Q9ULL8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC37.44■■■■□ 3.58
SHROOM4Q9ULL8 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC37.44■■■■□ 3.58
SHROOM4Q9ULL8 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC37.44■■■■□ 3.58
SHROOM4Q9ULL8 MED25-212ENST00000618715 1467 ntTSL 5 BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC37.43■■■■□ 3.58
SHROOM4Q9ULL8 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC37.42■■■■□ 3.58
SHROOM4Q9ULL8 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC37.41■■■■□ 3.58
SHROOM4Q9ULL8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC37.41■■■■□ 3.58
SHROOM4Q9ULL8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC37.41■■■■□ 3.58
SHROOM4Q9ULL8 AL137060.1-201ENST00000618151 2648 ntBASIC37.41■■■■□ 3.58
SHROOM4Q9ULL8 IER3-202ENST00000376377 1350 ntBASIC37.41■■■■□ 3.58
SHROOM4Q9ULL8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 PCED1CP-201ENST00000419887 785 ntBASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 CLEC4GP1-201ENST00000596555 870 ntBASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 VPS72-207ENST00000640458 689 ntTSL 5 BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC37.4■■■■□ 3.58
SHROOM4Q9ULL8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 AC116407.4-201ENST00000623319 1061 ntBASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 AC092720.2-201ENST00000602388 1665 ntBASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC37.39■■■■□ 3.58
SHROOM4Q9ULL8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC37.38■■■■□ 3.58
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms