Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 KRT8P20-201ENST00000423953 1409 ntBASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIMD1Q9UGP4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 AC117947.1-201ENST00000427448 529 ntBASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 KRT18P56-201ENST00000507275 550 ntBASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 C1QL1P1-201ENST00000568105 661 ntBASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 AC026271.3-201ENST00000571884 352 ntBASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 AL121894.2-201ENST00000602977 491 ntBASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LIMD1Q9UGP4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
LIMD1Q9UGP4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LIMD1Q9UGP4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LIMD1Q9UGP4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 DGCR10-201ENST00000609839 495 ntBASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 AP006587.1-201ENST00000534129 1502 ntBASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIMD1Q9UGP4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 AC091390.4-202ENST00000476426 537 ntBASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIMD1Q9UGP4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 AL031133.1-201ENST00000406807 723 ntBASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 KRT126P-201ENST00000549467 1181 ntBASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 SLC25A1P4-201ENST00000567977 778 ntBASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 AC139887.4-201ENST00000607877 719 ntBASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 AC005229.4-201ENST00000610085 2198 ntBASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.49■□□□□ 0.87
LIMD1Q9UGP4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms