Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 PCDHAC2-203ENST00000615316 3011 ntBASIC19.87■□□□□ 0.77
LHX3Q9UBR4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX3Q9UBR4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 HTR7P1-201ENST00000538670 1336 ntBASIC19.86■□□□□ 0.77
LHX3Q9UBR4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TUBB8P6-201ENST00000436895 1288 ntBASIC19.86■□□□□ 0.77
LHX3Q9UBR4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 AC093827.2-201ENST00000512654 315 ntBASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 C1QL1P1-201ENST00000568105 661 ntBASIC19.86■□□□□ 0.77
LHX3Q9UBR4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 Z99916.2-201ENST00000604037 246 ntBASIC19.86■□□□□ 0.77
LHX3Q9UBR4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX3Q9UBR4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 AP006294.2-201ENST00000641667 209 ntBASIC19.85■□□□□ 0.77
LHX3Q9UBR4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.85■□□□□ 0.77
LHX3Q9UBR4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.84■□□□□ 0.77
LHX3Q9UBR4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms