Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 NOC2LP1-202ENST00000452600 2235 ntBASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CCDC28BQ9BUN5 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 AL162412.1-201ENST00000567129 965 ntBASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 UBE2DNL-204ENST00000602536 740 ntBASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 AL139246.5-201ENST00000606645 996 ntBASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC28BQ9BUN5 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 AC005332.8-201ENST00000622750 2735 ntBASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 KRT19P1-201ENST00000405746 1186 ntBASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 KRT18P14-201ENST00000534205 1250 ntBASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 MYCNOS-205ENST00000641950 531 ntBASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC28BQ9BUN5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC28BQ9BUN5 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 YBX1P1-201ENST00000445822 960 ntBASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 TERF1P5-201ENST00000477545 1207 ntBASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 CROCCP3-202ENST00000420820 1947 ntBASIC19.08■□□□□ 0.64
CCDC28BQ9BUN5 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms