Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC004980.1-204ENST00000429707 299 ntBASIC19.56■□□□□ 0.72
VPS13AQ96RL7 PRSS44-201ENST00000515154 1146 ntBASIC19.56■□□□□ 0.72
VPS13AQ96RL7 MIR3652-201ENST00000579335 131 ntBASIC19.56■□□□□ 0.72
VPS13AQ96RL7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS13AQ96RL7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 AC005229.4-201ENST00000610085 2198 ntBASIC19.55■□□□□ 0.72
VPS13AQ96RL7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS13AQ96RL7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 TSPY17P-201ENST00000450329 467 ntBASIC19.54■□□□□ 0.72
VPS13AQ96RL7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 AC141257.4-201ENST00000634557 245 ntBASIC19.54■□□□□ 0.72
VPS13AQ96RL7 AC136944.6-201ENST00000634818 245 ntBASIC19.54■□□□□ 0.72
VPS13AQ96RL7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.54■□□□□ 0.72
VPS13AQ96RL7 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS13AQ96RL7 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 AP002469.2-201ENST00000531724 424 ntBASIC19.53■□□□□ 0.72
VPS13AQ96RL7 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 AL031008.1-201ENST00000619963 541 ntBASIC19.53■□□□□ 0.72
VPS13AQ96RL7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS13AQ96RL7 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 AC092183.1-201ENST00000469884 875 ntBASIC19.52■□□□□ 0.72
VPS13AQ96RL7 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS13AQ96RL7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VPS13AQ96RL7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS13AQ96RL7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VPS13AQ96RL7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.52■□□□□ 0.71
VPS13AQ96RL7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS13AQ96RL7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
VPS13AQ96RL7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS13AQ96RL7 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms