Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRCH3Q96II8 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LRCH3Q96II8 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRCH3Q96II8 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRCH3Q96II8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 KRT18P13-201ENST00000400056 1290 ntBASIC21.35■■□□□ 1.01
LRCH3Q96II8 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRCH3Q96II8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 SLC25A1P2-201ENST00000430693 912 ntBASIC21.35■■□□□ 1.01
LRCH3Q96II8 MFAP1P1-201ENST00000442257 1255 ntBASIC21.35■■□□□ 1.01
LRCH3Q96II8 EMBP1-201ENST00000458200 901 ntBASIC21.35■■□□□ 1.01
LRCH3Q96II8 AC092183.1-201ENST00000469884 875 ntBASIC21.35■■□□□ 1.01
LRCH3Q96II8 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 AC092329.2-201ENST00000598402 547 ntBASIC21.35■■□□□ 1.01
LRCH3Q96II8 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LRCH3Q96II8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRCH3Q96II8 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.35■■□□□ 1.01
LRCH3Q96II8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.34■■□□□ 1.01
LRCH3Q96II8 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
LRCH3Q96II8 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 AC079776.4-201ENST00000511039 504 ntBASIC21.34■■□□□ 1.01
LRCH3Q96II8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
LRCH3Q96II8 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
LRCH3Q96II8 AC104692.2-201ENST00000603054 253 ntBASIC21.34■■□□□ 1.01
LRCH3Q96II8 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.34■■□□□ 1.01
LRCH3Q96II8 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.34■■□□□ 1.01
LRCH3Q96II8 AC092338.2-201ENST00000568827 1415 ntBASIC21.34■■□□□ 1.01
LRCH3Q96II8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRCH3Q96II8 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
LRCH3Q96II8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.33■■□□□ 1.01
LRCH3Q96II8 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRCH3Q96II8 AL137060.1-201ENST00000618151 2648 ntBASIC21.33■■□□□ 1.01
LRCH3Q96II8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
LRCH3Q96II8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.33■■□□□ 1.01
LRCH3Q96II8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.33■■□□□ 1.01
LRCH3Q96II8 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRCH3Q96II8 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRCH3Q96II8 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.33■■□□□ 1.01
LRCH3Q96II8 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRCH3Q96II8 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.33■■□□□ 1.01
LRCH3Q96II8 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.33■■□□□ 1.01
LRCH3Q96II8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.33■■□□□ 1
LRCH3Q96II8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.33■■□□□ 1
LRCH3Q96II8 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
LRCH3Q96II8 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.32■■□□□ 1
LRCH3Q96II8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.32■■□□□ 1
LRCH3Q96II8 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.32■■□□□ 1
LRCH3Q96II8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.32■■□□□ 1
LRCH3Q96II8 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.32■■□□□ 1
LRCH3Q96II8 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.32■■□□□ 1
LRCH3Q96II8 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
LRCH3Q96II8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.32■■□□□ 1
LRCH3Q96II8 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
LRCH3Q96II8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
LRCH3Q96II8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRCH3Q96II8 AC008040.2-201ENST00000461049 708 ntBASIC21.31■■□□□ 1
LRCH3Q96II8 IFNL4P1-201ENST00000607083 540 ntBASIC21.31■■□□□ 1
LRCH3Q96II8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.31■■□□□ 1
LRCH3Q96II8 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms