Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 Z98882.1-201ENST00000622160 2253 ntBASIC26.83■■□□□ 1.89
NPHP3Q7Z494 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 DERL1-203ENST00000419562 918 ntTSL 2 BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC26.83■■□□□ 1.89
NPHP3Q7Z494 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.88
NPHP3Q7Z494 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.88
NPHP3Q7Z494 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 AC233723.2-201ENST00000623798 2106 ntBASIC26.82■■□□□ 1.88
NPHP3Q7Z494 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 AC012313.10-201ENST00000623509 926 ntBASIC26.82■■□□□ 1.88
NPHP3Q7Z494 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3Q7Z494 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 AC133561.1-201ENST00000568600 2415 ntBASIC26.81■■□□□ 1.88
NPHP3Q7Z494 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 AC083849.1-201ENST00000615227 514 ntBASIC26.81■■□□□ 1.88
NPHP3Q7Z494 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 ECEL1P1-201ENST00000373592 1742 ntBASIC26.81■■□□□ 1.88
NPHP3Q7Z494 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC26.81■■□□□ 1.88
NPHP3Q7Z494 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC26.8■■□□□ 1.88
NPHP3Q7Z494 PHGDH-210ENST00000641115 1638 ntBASIC26.8■■□□□ 1.88
NPHP3Q7Z494 DPP3P2-201ENST00000416030 1696 ntBASIC26.79■■□□□ 1.88
NPHP3Q7Z494 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 ATP5G2P1-201ENST00000433580 426 ntBASIC26.79■■□□□ 1.88
NPHP3Q7Z494 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 AC012676.1-201ENST00000574705 1949 ntBASIC26.79■■□□□ 1.88
NPHP3Q7Z494 AL024507.2-201ENST00000606070 2574 ntBASIC26.79■■□□□ 1.88
NPHP3Q7Z494 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC26.79■■□□□ 1.88
NPHP3Q7Z494 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 GLRB-205ENST00000512619 728 ntTSL 3 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3Q7Z494 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 SNX5-210ENST00000481323 562 ntTSL 3 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC26.77■■□□□ 1.88
NPHP3Q7Z494 IRF5-214ENST00000613821 595 ntTSL 5 BASIC26.77■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms