Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.16□□□□□ -0.14
COL7A1Q02388 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.16□□□□□ -0.14
COL7A1Q02388 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.16□□□□□ -0.14
COL7A1Q02388 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.16□□□□□ -0.14
COL7A1Q02388 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC14.16□□□□□ -0.14
COL7A1Q02388 AC104692.2-201ENST00000603054 253 ntBASIC14.16□□□□□ -0.14
COL7A1Q02388 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 AC005229.4-201ENST00000610085 2198 ntBASIC14.16□□□□□ -0.14
COL7A1Q02388 AC018553.1-201ENST00000616682 1458 ntBASIC14.16□□□□□ -0.14
COL7A1Q02388 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC14.15□□□□□ -0.14
COL7A1Q02388 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
COL7A1Q02388 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.15□□□□□ -0.14
COL7A1Q02388 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.15□□□□□ -0.14
COL7A1Q02388 MIR3652-201ENST00000579335 131 ntBASIC14.15□□□□□ -0.14
COL7A1Q02388 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL7A1Q02388 AL732292.2-201ENST00000609649 430 ntBASIC14.15□□□□□ -0.14
COL7A1Q02388 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 STAC-204ENST00000457375 1366 ntTSL 2 BASIC14.15□□□□□ -0.14
COL7A1Q02388 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.15□□□□□ -0.14
COL7A1Q02388 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.15□□□□□ -0.14
COL7A1Q02388 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL7A1Q02388 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC14.15□□□□□ -0.14
COL7A1Q02388 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL7A1Q02388 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL7A1Q02388 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.14□□□□□ -0.15
COL7A1Q02388 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC242852.2-201ENST00000615738 1807 ntBASIC14.14□□□□□ -0.15
COL7A1Q02388 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 KRT8P20-201ENST00000423953 1409 ntBASIC14.14□□□□□ -0.15
COL7A1Q02388 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 EMBP1-201ENST00000458200 901 ntBASIC14.14□□□□□ -0.15
COL7A1Q02388 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC14.14□□□□□ -0.15
COL7A1Q02388 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.14□□□□□ -0.15
COL7A1Q02388 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
COL7A1Q02388 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC14.14□□□□□ -0.15
COL7A1Q02388 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.14□□□□□ -0.15
COL7A1Q02388 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.14□□□□□ -0.15
COL7A1Q02388 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL7A1Q02388 TFP1-202ENST00000475455 1573 ntBASIC14.14□□□□□ -0.15
COL7A1Q02388 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.14□□□□□ -0.15
COL7A1Q02388 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC14.13□□□□□ -0.15
COL7A1Q02388 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL7A1Q02388 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
COL7A1Q02388 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 AL022342.1-201ENST00000400363 863 ntBASIC14.13□□□□□ -0.15
COL7A1Q02388 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.13□□□□□ -0.15
COL7A1Q02388 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC14.13□□□□□ -0.15
COL7A1Q02388 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC14.13□□□□□ -0.15
COL7A1Q02388 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
COL7A1Q02388 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
COL7A1Q02388 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC14.13□□□□□ -0.15
COL7A1Q02388 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL7A1Q02388 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.13□□□□□ -0.15
COL7A1Q02388 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.13□□□□□ -0.15
COL7A1Q02388 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.13□□□□□ -0.15
COL7A1Q02388 AP003041.3-201ENST00000527151 707 ntBASIC14.13□□□□□ -0.15
COL7A1Q02388 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
COL7A1Q02388 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms