Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCA4P78363 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 NAPSB-206ENST00000562112 1266 ntBASIC16.94■□□□□ 0.3
ABCA4P78363 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.94■□□□□ 0.3
ABCA4P78363 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCA4P78363 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.94■□□□□ 0.3
ABCA4P78363 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.93■□□□□ 0.3
ABCA4P78363 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
ABCA4P78363 TFP1-202ENST00000475455 1573 ntBASIC16.93■□□□□ 0.3
ABCA4P78363 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 YBX1P10-201ENST00000444752 975 ntBASIC16.93■□□□□ 0.3
ABCA4P78363 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.93■□□□□ 0.3
ABCA4P78363 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.93■□□□□ 0.3
ABCA4P78363 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.93■□□□□ 0.3
ABCA4P78363 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
ABCA4P78363 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.93■□□□□ 0.3
ABCA4P78363 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.93■□□□□ 0.3
ABCA4P78363 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
ABCA4P78363 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.93■□□□□ 0.3
ABCA4P78363 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCA4P78363 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ABCA4P78363 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.93■□□□□ 0.3
ABCA4P78363 DGCR10-201ENST00000609839 495 ntBASIC16.93■□□□□ 0.3
ABCA4P78363 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.93■□□□□ 0.3
ABCA4P78363 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
ABCA4P78363 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ABCA4P78363 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
ABCA4P78363 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.92■□□□□ 0.3
ABCA4P78363 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.92■□□□□ 0.3
ABCA4P78363 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.92■□□□□ 0.3
ABCA4P78363 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ABCA4P78363 AL049796.1-201ENST00000565336 1766 ntBASIC16.92■□□□□ 0.3
ABCA4P78363 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
ABCA4P78363 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.92■□□□□ 0.3
ABCA4P78363 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ABCA4P78363 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.92■□□□□ 0.3
ABCA4P78363 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCA4P78363 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
ABCA4P78363 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 HLA-G-202ENST00000376815 851 ntBASIC16.91■□□□□ 0.3
ABCA4P78363 HLA-G-203ENST00000376818 1127 ntBASIC16.91■□□□□ 0.3
ABCA4P78363 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.91■□□□□ 0.3
ABCA4P78363 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.91■□□□□ 0.3
ABCA4P78363 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.91■□□□□ 0.3
ABCA4P78363 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.91■□□□□ 0.3
ABCA4P78363 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ABCA4P78363 AC116351.2-201ENST00000606540 1585 ntBASIC16.91■□□□□ 0.3
ABCA4P78363 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
ABCA4P78363 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.91■□□□□ 0.3
ABCA4P78363 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.91■□□□□ 0.3
ABCA4P78363 LINC01238-205ENST00000567549 1107 ntBASIC16.91■□□□□ 0.3
ABCA4P78363 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ABCA4P78363 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.91■□□□□ 0.3
ABCA4P78363 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.91■□□□□ 0.3
ABCA4P78363 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCA4P78363 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms