Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
YBX1P67809 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
YBX1P67809 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
YBX1P67809 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
YBX1P67809 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.19■□□□□ 0.66
YBX1P67809 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.19■□□□□ 0.66
YBX1P67809 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
YBX1P67809 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
YBX1P67809 ABHD17AP1-201ENST00000358206 933 ntBASIC19.19■□□□□ 0.66
YBX1P67809 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
YBX1P67809 POU5F1P3-201ENST00000428824 1078 ntBASIC19.19■□□□□ 0.66
YBX1P67809 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.19■□□□□ 0.66
YBX1P67809 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
YBX1P67809 AC120498.8-201ENST00000614275 531 ntBASIC19.19■□□□□ 0.66
YBX1P67809 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.19■□□□□ 0.66
YBX1P67809 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
YBX1P67809 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.18■□□□□ 0.66
YBX1P67809 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.18■□□□□ 0.66
YBX1P67809 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
YBX1P67809 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.18■□□□□ 0.66
YBX1P67809 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
YBX1P67809 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
YBX1P67809 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
YBX1P67809 RPS2P52-201ENST00000469610 820 ntBASIC19.18■□□□□ 0.66
YBX1P67809 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.18■□□□□ 0.66
YBX1P67809 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
YBX1P67809 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.18■□□□□ 0.66
YBX1P67809 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.18■□□□□ 0.66
YBX1P67809 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.18■□□□□ 0.66
YBX1P67809 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.18■□□□□ 0.66
YBX1P67809 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.18■□□□□ 0.66
YBX1P67809 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
YBX1P67809 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
YBX1P67809 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.17■□□□□ 0.66
YBX1P67809 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
YBX1P67809 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
YBX1P67809 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
YBX1P67809 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.17■□□□□ 0.66
YBX1P67809 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.17■□□□□ 0.66
YBX1P67809 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.17■□□□□ 0.66
YBX1P67809 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
YBX1P67809 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
YBX1P67809 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.16■□□□□ 0.66
YBX1P67809 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.16■□□□□ 0.66
YBX1P67809 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.16■□□□□ 0.66
YBX1P67809 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.16■□□□□ 0.66
YBX1P67809 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.16■□□□□ 0.66
YBX1P67809 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.16■□□□□ 0.66
YBX1P67809 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.16■□□□□ 0.66
YBX1P67809 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.16■□□□□ 0.66
YBX1P67809 AC006058.3-201ENST00000606217 1069 ntBASIC19.16■□□□□ 0.66
YBX1P67809 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.16■□□□□ 0.66
YBX1P67809 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
YBX1P67809 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
YBX1P67809 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.16■□□□□ 0.66
YBX1P67809 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
YBX1P67809 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms