Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.48■□□□□ 0.71
LIMK1P53667 AL138966.2-201ENST00000621997 464 ntBASIC19.48■□□□□ 0.71
LIMK1P53667 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMK1P53667 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.48■□□□□ 0.71
LIMK1P53667 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
LIMK1P53667 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
LIMK1P53667 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.48■□□□□ 0.71
LIMK1P53667 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LIMK1P53667 PCED1CP-201ENST00000419887 785 ntBASIC19.47■□□□□ 0.71
LIMK1P53667 TSPY5P-201ENST00000426936 936 ntBASIC19.47■□□□□ 0.71
LIMK1P53667 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMK1P53667 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.47■□□□□ 0.71
LIMK1P53667 AC139887.4-201ENST00000607877 719 ntBASIC19.47■□□□□ 0.71
LIMK1P53667 AL445675.2-201ENST00000620291 557 ntBASIC19.47■□□□□ 0.71
LIMK1P53667 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMK1P53667 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMK1P53667 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMK1P53667 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMK1P53667 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMK1P53667 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
LIMK1P53667 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
LIMK1P53667 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 AC092647.4-201ENST00000457211 535 ntBASIC19.46■□□□□ 0.71
LIMK1P53667 B3GAT3P1-201ENST00000471720 806 ntBASIC19.46■□□□□ 0.71
LIMK1P53667 FAM86EP-206ENST00000510506 987 ntBASIC19.46■□□□□ 0.71
LIMK1P53667 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMK1P53667 AL691432.3-201ENST00000621860 400 ntBASIC19.46■□□□□ 0.71
LIMK1P53667 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.46■□□□□ 0.71
LIMK1P53667 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LIMK1P53667 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LIMK1P53667 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.46■□□□□ 0.71
LIMK1P53667 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMK1P53667 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
LIMK1P53667 IER3-202ENST00000376377 1350 ntBASIC19.45■□□□□ 0.7
LIMK1P53667 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.45■□□□□ 0.7
LIMK1P53667 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMK1P53667 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMK1P53667 FEM1AP4-201ENST00000443167 1987 ntBASIC19.45■□□□□ 0.7
LIMK1P53667 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMK1P53667 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.45■□□□□ 0.7
LIMK1P53667 YBX1P2-201ENST00000489612 999 ntBASIC19.45■□□□□ 0.7
LIMK1P53667 AC097488.1-201ENST00000507834 756 ntBASIC19.45■□□□□ 0.7
LIMK1P53667 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.45■□□□□ 0.7
LIMK1P53667 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.45■□□□□ 0.7
LIMK1P53667 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.45■□□□□ 0.7
LIMK1P53667 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMK1P53667 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.45■□□□□ 0.7
LIMK1P53667 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
LIMK1P53667 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMK1P53667 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.45■□□□□ 0.7
LIMK1P53667 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMK1P53667 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LIMK1P53667 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIMK1P53667 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMK1P53667 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMK1P53667 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMK1P53667 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMK1P53667 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMK1P53667 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMK1P53667 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
LIMK1P53667 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
LIMK1P53667 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMK1P53667 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMK1P53667 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms