Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RFC3P40938 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RFC3P40938 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18■□□□□ 0.47
RFC3P40938 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18■□□□□ 0.47
RFC3P40938 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18■□□□□ 0.47
RFC3P40938 AC211429.1-201ENST00000415277 523 ntBASIC18■□□□□ 0.47
RFC3P40938 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18■□□□□ 0.47
RFC3P40938 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18■□□□□ 0.47
RFC3P40938 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18■□□□□ 0.47
RFC3P40938 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18■□□□□ 0.47
RFC3P40938 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18■□□□□ 0.47
RFC3P40938 AC026471.5-201ENST00000615068 467 ntBASIC18■□□□□ 0.47
RFC3P40938 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18■□□□□ 0.47
RFC3P40938 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
RFC3P40938 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18■□□□□ 0.47
RFC3P40938 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RFC3P40938 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RFC3P40938 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.99■□□□□ 0.47
RFC3P40938 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.99■□□□□ 0.47
RFC3P40938 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
RFC3P40938 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.99■□□□□ 0.47
RFC3P40938 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.99■□□□□ 0.47
RFC3P40938 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.99■□□□□ 0.47
RFC3P40938 AP002982.1-201ENST00000492365 877 ntBASIC17.99■□□□□ 0.47
RFC3P40938 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.99■□□□□ 0.47
RFC3P40938 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.99■□□□□ 0.47
RFC3P40938 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.99■□□□□ 0.47
RFC3P40938 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.99■□□□□ 0.47
RFC3P40938 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
RFC3P40938 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.99■□□□□ 0.47
RFC3P40938 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
RFC3P40938 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFC3P40938 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
RFC3P40938 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.98■□□□□ 0.47
RFC3P40938 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.98■□□□□ 0.47
RFC3P40938 AL355355.2-201ENST00000442321 338 ntBASIC17.98■□□□□ 0.47
RFC3P40938 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
RFC3P40938 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.98■□□□□ 0.47
RFC3P40938 AP003071.4-201ENST00000562276 1284 ntBASIC17.98■□□□□ 0.47
RFC3P40938 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.98■□□□□ 0.47
RFC3P40938 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
RFC3P40938 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
RFC3P40938 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
RFC3P40938 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFC3P40938 AP006587.1-201ENST00000534129 1502 ntBASIC17.98■□□□□ 0.47
RFC3P40938 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.98■□□□□ 0.47
RFC3P40938 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
RFC3P40938 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RFC3P40938 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.97■□□□□ 0.47
RFC3P40938 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 AC018553.1-201ENST00000616682 1458 ntBASIC17.97■□□□□ 0.47
RFC3P40938 AC073314.1-201ENST00000568729 2216 ntBASIC17.97■□□□□ 0.47
RFC3P40938 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.97■□□□□ 0.47
RFC3P40938 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.97■□□□□ 0.47
RFC3P40938 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
RFC3P40938 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.97■□□□□ 0.47
RFC3P40938 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.97■□□□□ 0.47
RFC3P40938 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.97■□□□□ 0.47
RFC3P40938 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.97■□□□□ 0.47
RFC3P40938 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.97■□□□□ 0.47
RFC3P40938 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
RFC3P40938 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
RFC3P40938 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
RFC3P40938 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFC3P40938 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.97■□□□□ 0.47
RFC3P40938 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFC3P40938 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFC3P40938 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFC3P40938 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFC3P40938 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms