Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL8A1P27658 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.21■□□□□ 0.34
COL8A1P27658 C1orf229-201ENST00000623686 2258 ntBASIC17.21■□□□□ 0.34
COL8A1P27658 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.21■□□□□ 0.34
COL8A1P27658 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.2■□□□□ 0.34
COL8A1P27658 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
COL8A1P27658 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
COL8A1P27658 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.2■□□□□ 0.34
COL8A1P27658 AC007663.1-201ENST00000438948 1240 ntBASIC17.2■□□□□ 0.34
COL8A1P27658 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 HOMER2P1-201ENST00000455653 964 ntBASIC17.2■□□□□ 0.34
COL8A1P27658 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
COL8A1P27658 C1QL1P1-201ENST00000568105 661 ntBASIC17.2■□□□□ 0.34
COL8A1P27658 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.2■□□□□ 0.34
COL8A1P27658 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 AC140113.3-201ENST00000605663 199 ntBASIC17.2■□□□□ 0.34
COL8A1P27658 AC004263.2-201ENST00000617183 678 ntBASIC17.2■□□□□ 0.34
COL8A1P27658 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
COL8A1P27658 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL8A1P27658 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.2■□□□□ 0.34
COL8A1P27658 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.19■□□□□ 0.34
COL8A1P27658 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
COL8A1P27658 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL8A1P27658 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
COL8A1P27658 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 CCR12P-201ENST00000446203 998 ntBASIC17.19■□□□□ 0.34
COL8A1P27658 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.19■□□□□ 0.34
COL8A1P27658 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL8A1P27658 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL8A1P27658 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.19■□□□□ 0.34
COL8A1P27658 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.19■□□□□ 0.34
COL8A1P27658 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL8A1P27658 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.18■□□□□ 0.34
COL8A1P27658 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 MFAP1P1-201ENST00000442257 1255 ntBASIC17.18■□□□□ 0.34
COL8A1P27658 AC008040.2-201ENST00000461049 708 ntBASIC17.18■□□□□ 0.34
COL8A1P27658 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL8A1P27658 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.18■□□□□ 0.34
COL8A1P27658 AC131212.4-201ENST00000623606 975 ntBASIC17.18■□□□□ 0.34
COL8A1P27658 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.18■□□□□ 0.34
COL8A1P27658 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.18■□□□□ 0.34
COL8A1P27658 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL8A1P27658 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms