Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.69■□□□□ 0.9
COL6A3P12111 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.69■□□□□ 0.9
COL6A3P12111 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.69■□□□□ 0.9
COL6A3P12111 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A3P12111 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
COL6A3P12111 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.68■□□□□ 0.9
COL6A3P12111 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A3P12111 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A3P12111 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A3P12111 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A3P12111 PMS2P7-201ENST00000506558 1336 ntBASIC20.68■□□□□ 0.9
COL6A3P12111 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A3P12111 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL6A3P12111 AL121672.3-201ENST00000608644 468 ntBASIC20.68■□□□□ 0.9
COL6A3P12111 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL6A3P12111 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.68■□□□□ 0.9
COL6A3P12111 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL6A3P12111 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A3P12111 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.67■□□□□ 0.9
COL6A3P12111 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A3P12111 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
COL6A3P12111 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.67■□□□□ 0.9
COL6A3P12111 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A3P12111 TSSC2-201ENST00000450217 709 ntBASIC20.67■□□□□ 0.9
COL6A3P12111 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL6A3P12111 AL691403.2-201ENST00000618460 490 ntBASIC20.67■□□□□ 0.9
COL6A3P12111 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL6A3P12111 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A3P12111 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A3P12111 PGAM5P1-201ENST00000518923 814 ntBASIC20.67■□□□□ 0.9
COL6A3P12111 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A3P12111 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A3P12111 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A3P12111 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL6A3P12111 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.66■□□□□ 0.9
COL6A3P12111 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A3P12111 BX276092.5-203ENST00000456199 560 ntBASIC20.66■□□□□ 0.9
COL6A3P12111 AP003041.3-201ENST00000527151 707 ntBASIC20.66■□□□□ 0.9
COL6A3P12111 TPSP2-201ENST00000561760 610 ntBASIC20.66■□□□□ 0.9
COL6A3P12111 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL6A3P12111 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.66■□□□□ 0.9
COL6A3P12111 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A3P12111 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL6A3P12111 AC092597.1-201ENST00000487352 616 ntBASIC20.66■□□□□ 0.9
COL6A3P12111 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
COL6A3P12111 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.66■□□□□ 0.9
COL6A3P12111 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
COL6A3P12111 AC112497.1-201ENST00000624824 639 ntBASIC20.66■□□□□ 0.9
COL6A3P12111 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.66■□□□□ 0.9
COL6A3P12111 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A3P12111 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A3P12111 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A3P12111 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A3P12111 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A3P12111 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A3P12111 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A3P12111 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A3P12111 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A3P12111 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A3P12111 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A3P12111 PTBP1P-201ENST00000554374 1601 ntBASIC20.65■□□□□ 0.9
COL6A3P12111 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A3P12111 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A3P12111 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A3P12111 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
COL6A3P12111 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.64■□□□□ 0.9
COL6A3P12111 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
COL6A3P12111 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A3P12111 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A3P12111 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A3P12111 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A3P12111 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.64■□□□□ 0.89
COL6A3P12111 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.64■□□□□ 0.89
COL6A3P12111 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.64■□□□□ 0.89
COL6A3P12111 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.64■□□□□ 0.89
COL6A3P12111 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A3P12111 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
COL6A3P12111 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.64■□□□□ 0.89
COL6A3P12111 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A3P12111 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.64■□□□□ 0.89
COL6A3P12111 FOSL1P1-201ENST00000511041 816 ntBASIC20.64■□□□□ 0.89
COL6A3P12111 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.64■□□□□ 0.89
COL6A3P12111 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A3P12111 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A3P12111 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A3P12111 MIR940-201ENST00000401276 94 ntBASIC20.63■□□□□ 0.89
COL6A3P12111 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A3P12111 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A3P12111 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.63■□□□□ 0.89
COL6A3P12111 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A3P12111 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A3P12111 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A3P12111 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A3P12111 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A3P12111 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL6A3P12111 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A3P12111 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A3P12111 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A3P12111 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms