Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
COL4A1P02462 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC24.2■■□□□ 1.46
COL4A1P02462 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
COL4A1P02462 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC24.19■■□□□ 1.46
COL4A1P02462 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
COL4A1P02462 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC24.19■■□□□ 1.46
COL4A1P02462 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
COL4A1P02462 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC24.19■■□□□ 1.46
COL4A1P02462 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
COL4A1P02462 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC24.18■■□□□ 1.46
COL4A1P02462 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.18■■□□□ 1.46
COL4A1P02462 PTPA-216ENST00000432651 857 ntTSL 2 BASIC24.18■■□□□ 1.46
COL4A1P02462 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC24.18■■□□□ 1.46
COL4A1P02462 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC24.18■■□□□ 1.46
COL4A1P02462 CBFB-203ENST00000561924 584 ntTSL 5 BASIC24.18■■□□□ 1.46
COL4A1P02462 AC011298.2-201ENST00000617989 482 ntBASIC24.18■■□□□ 1.46
COL4A1P02462 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
COL4A1P02462 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
COL4A1P02462 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
COL4A1P02462 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
COL4A1P02462 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
COL4A1P02462 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.18■■□□□ 1.46
COL4A1P02462 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
COL4A1P02462 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
COL4A1P02462 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
COL4A1P02462 AL137013.1-201ENST00000432946 1228 ntBASIC24.18■■□□□ 1.46
COL4A1P02462 AC091390.4-202ENST00000476426 537 ntBASIC24.18■■□□□ 1.46
COL4A1P02462 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC24.18■■□□□ 1.46
COL4A1P02462 NT5C-211ENST00000582170 653 ntTSL 3 BASIC24.18■■□□□ 1.46
COL4A1P02462 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
COL4A1P02462 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
COL4A1P02462 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC24.17■■□□□ 1.46
COL4A1P02462 DET1-207ENST00000564406 2315 ntTSL 2 BASIC24.17■■□□□ 1.46
COL4A1P02462 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL4A1P02462 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL4A1P02462 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
COL4A1P02462 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC24.17■■□□□ 1.46
COL4A1P02462 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC24.17■■□□□ 1.46
COL4A1P02462 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL4A1P02462 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL4A1P02462 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL4A1P02462 AL512408.1-201ENST00000569378 2000 ntBASIC24.16■■□□□ 1.46
COL4A1P02462 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
COL4A1P02462 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
COL4A1P02462 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
COL4A1P02462 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
COL4A1P02462 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC24.16■■□□□ 1.46
COL4A1P02462 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
COL4A1P02462 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
COL4A1P02462 MYC-208ENST00000641036 567 ntBASIC24.16■■□□□ 1.46
COL4A1P02462 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
COL4A1P02462 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.15■■□□□ 1.46
COL4A1P02462 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC24.15■■□□□ 1.46
COL4A1P02462 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL4A1P02462 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
COL4A1P02462 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL4A1P02462 ARMC10P1-201ENST00000313754 855 ntBASIC24.15■■□□□ 1.46
COL4A1P02462 GUK1-204ENST00000366721 689 ntTSL 3 BASIC24.15■■□□□ 1.46
COL4A1P02462 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL4A1P02462 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC24.15■■□□□ 1.46
COL4A1P02462 MFAP1P1-201ENST00000442257 1255 ntBASIC24.15■■□□□ 1.46
COL4A1P02462 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC24.15■■□□□ 1.46
COL4A1P02462 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC24.15■■□□□ 1.46
COL4A1P02462 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC24.15■■□□□ 1.46
COL4A1P02462 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.15■■□□□ 1.46
COL4A1P02462 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC24.15■■□□□ 1.46
COL4A1P02462 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
COL4A1P02462 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC24.15■■□□□ 1.46
COL4A1P02462 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.15■■□□□ 1.46
COL4A1P02462 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
COL4A1P02462 AC022616.7-201ENST00000525383 220 ntBASIC24.15■■□□□ 1.46
COL4A1P02462 LTBR-211ENST00000543190 785 ntTSL 3 BASIC24.15■■□□□ 1.46
COL4A1P02462 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC24.15■■□□□ 1.46
COL4A1P02462 AP005212.1-201ENST00000581547 1997 ntBASIC24.14■■□□□ 1.46
COL4A1P02462 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
COL4A1P02462 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC24.14■■□□□ 1.46
COL4A1P02462 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC24.14■■□□□ 1.46
COL4A1P02462 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
COL4A1P02462 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
COL4A1P02462 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
COL4A1P02462 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
COL4A1P02462 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC24.14■■□□□ 1.45
COL4A1P02462 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC24.14■■□□□ 1.45
COL4A1P02462 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
COL4A1P02462 SLC25A1P4-201ENST00000567977 778 ntBASIC24.14■■□□□ 1.45
COL4A1P02462 AP000692.2-201ENST00000608391 879 ntBASIC24.14■■□□□ 1.45
COL4A1P02462 AC131212.4-201ENST00000623606 975 ntBASIC24.14■■□□□ 1.45
COL4A1P02462 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
COL4A1P02462 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL4A1P02462 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms