Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.04■□□□□ 0.64
CLDN9O95484 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.04■□□□□ 0.64
CLDN9O95484 AC005332.7-201ENST00000614046 2005 ntBASIC19.04■□□□□ 0.64
CLDN9O95484 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.04■□□□□ 0.64
CLDN9O95484 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CLDN9O95484 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CLDN9O95484 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CLDN9O95484 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CLDN9O95484 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.03■□□□□ 0.64
CLDN9O95484 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.03■□□□□ 0.64
CLDN9O95484 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CLDN9O95484 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.03■□□□□ 0.64
CLDN9O95484 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN9O95484 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.03■□□□□ 0.64
CLDN9O95484 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.03■□□□□ 0.64
CLDN9O95484 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.03■□□□□ 0.64
CLDN9O95484 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CLDN9O95484 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
CLDN9O95484 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CLDN9O95484 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLDN9O95484 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.03■□□□□ 0.64
CLDN9O95484 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CLDN9O95484 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN9O95484 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.02■□□□□ 0.64
CLDN9O95484 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN9O95484 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.02■□□□□ 0.64
CLDN9O95484 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CLDN9O95484 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.02■□□□□ 0.64
CLDN9O95484 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN9O95484 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.02■□□□□ 0.64
CLDN9O95484 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN9O95484 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.02■□□□□ 0.64
CLDN9O95484 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.02■□□□□ 0.64
CLDN9O95484 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.02■□□□□ 0.64
CLDN9O95484 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLDN9O95484 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.02■□□□□ 0.64
CLDN9O95484 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.63
CLDN9O95484 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.02■□□□□ 0.63
CLDN9O95484 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CLDN9O95484 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN9O95484 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.01■□□□□ 0.63
CLDN9O95484 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN9O95484 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN9O95484 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLDN9O95484 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN9O95484 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.01■□□□□ 0.63
CLDN9O95484 AC097658.1-201ENST00000475555 843 ntBASIC19.01■□□□□ 0.63
CLDN9O95484 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN9O95484 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN9O95484 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLDN9O95484 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN9O95484 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.01■□□□□ 0.63
CLDN9O95484 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
CLDN9O95484 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CLDN9O95484 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19■□□□□ 0.63
CLDN9O95484 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CLDN9O95484 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19■□□□□ 0.63
CLDN9O95484 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19■□□□□ 0.63
CLDN9O95484 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19■□□□□ 0.63
CLDN9O95484 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19■□□□□ 0.63
CLDN9O95484 AC092666.2-201ENST00000613287 246 ntBASIC19■□□□□ 0.63
CLDN9O95484 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLDN9O95484 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CLDN9O95484 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN9O95484 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN9O95484 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.99■□□□□ 0.63
CLDN9O95484 TFP1-202ENST00000475455 1573 ntBASIC18.99■□□□□ 0.63
CLDN9O95484 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN9O95484 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN9O95484 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.99■□□□□ 0.63
CLDN9O95484 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLDN9O95484 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms