Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
SIX3O95343 AC092666.2-201ENST00000613287 246 ntBASIC19.22■□□□□ 0.67
SIX3O95343 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX3O95343 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.22■□□□□ 0.67
SIX3O95343 AL032819.2-201ENST00000624543 2162 ntBASIC19.22■□□□□ 0.67
SIX3O95343 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SIX3O95343 AC018553.1-201ENST00000616682 1458 ntBASIC19.22■□□□□ 0.67
SIX3O95343 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX3O95343 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SIX3O95343 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX3O95343 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SIX3O95343 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 AL020996.1-203ENST00000536896 2307 ntBASIC19.21■□□□□ 0.67
SIX3O95343 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX3O95343 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 BX323043.1-201ENST00000641006 1765 ntBASIC19.21■□□□□ 0.67
SIX3O95343 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX3O95343 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX3O95343 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX3O95343 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SIX3O95343 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.2■□□□□ 0.66
SIX3O95343 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX3O95343 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX3O95343 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SIX3O95343 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX3O95343 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX3O95343 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX3O95343 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.2■□□□□ 0.66
SIX3O95343 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SIX3O95343 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SIX3O95343 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SIX3O95343 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SIX3O95343 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.2■□□□□ 0.66
SIX3O95343 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
SIX3O95343 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
SIX3O95343 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX3O95343 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX3O95343 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
SIX3O95343 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SIX3O95343 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX3O95343 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 MIPEPP3-201ENST00000412105 444 ntBASIC19.19■□□□□ 0.66
SIX3O95343 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SIX3O95343 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SIX3O95343 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.19■□□□□ 0.66
SIX3O95343 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SIX3O95343 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX3O95343 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX3O95343 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SIX3O95343 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms