Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VPS4BO75351 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS4BO75351 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS4BO75351 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
VPS4BO75351 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS4BO75351 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4BO75351 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4BO75351 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4BO75351 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4BO75351 AC016405.3-201ENST00000607710 860 ntBASIC19.25■□□□□ 0.67
VPS4BO75351 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
VPS4BO75351 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VPS4BO75351 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS4BO75351 KRT8P17-201ENST00000453110 1448 ntBASIC19.25■□□□□ 0.67
VPS4BO75351 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 AC093787.1-201ENST00000450396 207 ntBASIC19.24■□□□□ 0.67
VPS4BO75351 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS4BO75351 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS4BO75351 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4BO75351 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS4BO75351 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VPS4BO75351 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS4BO75351 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS4BO75351 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.23■□□□□ 0.67
VPS4BO75351 AC083880.1-201ENST00000608266 535 ntBASIC19.23■□□□□ 0.67
VPS4BO75351 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS4BO75351 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4BO75351 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS4BO75351 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 PTBP1P-201ENST00000554374 1601 ntBASIC19.22■□□□□ 0.67
VPS4BO75351 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4BO75351 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4BO75351 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS4BO75351 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 AC098818.2-201ENST00000564925 2320 ntBASIC19.22■□□□□ 0.67
VPS4BO75351 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
VPS4BO75351 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS4BO75351 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS4BO75351 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4BO75351 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS4BO75351 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 Z82202.1-201ENST00000623446 1880 ntBASIC19.22■□□□□ 0.67
VPS4BO75351 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS4BO75351 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VPS4BO75351 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS4BO75351 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS4BO75351 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS4BO75351 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS4BO75351 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS4BO75351 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS4BO75351 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 AL031963.3-201ENST00000606441 850 ntBASIC19.21■□□□□ 0.67
VPS4BO75351 AP001271.2-201ENST00000624018 1556 ntBASIC19.21■□□□□ 0.67
VPS4BO75351 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS4BO75351 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS4BO75351 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS4BO75351 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS4BO75351 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS4BO75351 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
VPS4BO75351 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS4BO75351 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VPS4BO75351 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms