Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC016405.3-201ENST00000607710 860 ntBASIC16.72■□□□□ 0.27
SDCBPO00560 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
SDCBPO00560 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDCBPO00560 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 AC087633.2-202ENST00000565166 1439 ntBASIC16.71■□□□□ 0.27
SDCBPO00560 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SDCBPO00560 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.71■□□□□ 0.27
SDCBPO00560 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SDCBPO00560 DUX4L16-201ENST00000555130 1264 ntBASIC16.71■□□□□ 0.27
SDCBPO00560 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.71■□□□□ 0.27
SDCBPO00560 AL356652.1-201ENST00000615962 565 ntBASIC16.71■□□□□ 0.27
SDCBPO00560 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SDCBPO00560 GAS2L1P2-201ENST00000436355 1356 ntBASIC16.71■□□□□ 0.27
SDCBPO00560 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SDCBPO00560 CYP21A1P-202ENST00000354927 1481 ntBASIC16.71■□□□□ 0.27
SDCBPO00560 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDCBPO00560 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.71■□□□□ 0.27
SDCBPO00560 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.71■□□□□ 0.27
SDCBPO00560 AC093503.3-201ENST00000624917 2352 ntBASIC16.71■□□□□ 0.26
SDCBPO00560 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SDCBPO00560 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.7■□□□□ 0.26
SDCBPO00560 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SDCBPO00560 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 CNN2P6-201ENST00000439038 900 ntBASIC16.7■□□□□ 0.26
SDCBPO00560 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.7■□□□□ 0.26
SDCBPO00560 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.7■□□□□ 0.26
SDCBPO00560 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
SDCBPO00560 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.7■□□□□ 0.26
SDCBPO00560 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.7■□□□□ 0.26
SDCBPO00560 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDCBPO00560 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.7■□□□□ 0.26
SDCBPO00560 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.69■□□□□ 0.26
SDCBPO00560 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
SDCBPO00560 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.69■□□□□ 0.26
SDCBPO00560 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.69■□□□□ 0.26
SDCBPO00560 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.69■□□□□ 0.26
SDCBPO00560 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.69■□□□□ 0.26
SDCBPO00560 AC022517.1-201ENST00000592429 346 ntBASIC16.69■□□□□ 0.26
SDCBPO00560 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.69■□□□□ 0.26
SDCBPO00560 AC231657.2-201ENST00000624556 255 ntBASIC16.69■□□□□ 0.26
SDCBPO00560 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.69■□□□□ 0.26
SDCBPO00560 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.69■□□□□ 0.26
SDCBPO00560 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.69■□□□□ 0.26
SDCBPO00560 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.69■□□□□ 0.26
SDCBPO00560 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDCBPO00560 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SDCBPO00560 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms