Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.08■□□□□ 0.97
FOXN3O00409 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXN3O00409 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXN3O00409 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXN3O00409 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.08■□□□□ 0.96
FOXN3O00409 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
FOXN3O00409 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXN3O00409 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
FOXN3O00409 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXN3O00409 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXN3O00409 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXN3O00409 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
FOXN3O00409 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXN3O00409 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.07■□□□□ 0.96
FOXN3O00409 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.07■□□□□ 0.96
FOXN3O00409 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.07■□□□□ 0.96
FOXN3O00409 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXN3O00409 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
FOXN3O00409 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXN3O00409 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.07■□□□□ 0.96
FOXN3O00409 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
FOXN3O00409 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
FOXN3O00409 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXN3O00409 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
FOXN3O00409 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXN3O00409 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXN3O00409 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXN3O00409 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXN3O00409 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXN3O00409 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
FOXN3O00409 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXN3O00409 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
FOXN3O00409 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXN3O00409 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.05■□□□□ 0.96
FOXN3O00409 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXN3O00409 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXN3O00409 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
FOXN3O00409 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.05■□□□□ 0.96
FOXN3O00409 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXN3O00409 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
FOXN3O00409 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXN3O00409 AL355802.2-201ENST00000402069 882 ntBASIC21.05■□□□□ 0.96
FOXN3O00409 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXN3O00409 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.05■□□□□ 0.96
FOXN3O00409 AC120498.8-201ENST00000614275 531 ntBASIC21.05■□□□□ 0.96
FOXN3O00409 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.05■□□□□ 0.96
FOXN3O00409 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXN3O00409 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
FOXN3O00409 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXN3O00409 Z82202.1-201ENST00000623446 1880 ntBASIC21.05■□□□□ 0.96
FOXN3O00409 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXN3O00409 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXN3O00409 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
FOXN3O00409 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.04■□□□□ 0.96
FOXN3O00409 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.04■□□□□ 0.96
FOXN3O00409 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.04■□□□□ 0.96
FOXN3O00409 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.04■□□□□ 0.96
FOXN3O00409 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXN3O00409 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXN3O00409 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXN3O00409 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXN3O00409 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.03■□□□□ 0.96
FOXN3O00409 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXN3O00409 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXN3O00409 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
FOXN3O00409 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.03■□□□□ 0.96
FOXN3O00409 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.03■□□□□ 0.96
FOXN3O00409 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.03■□□□□ 0.96
FOXN3O00409 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.03■□□□□ 0.96
FOXN3O00409 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
FOXN3O00409 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.03■□□□□ 0.96
FOXN3O00409 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
FOXN3O00409 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXN3O00409 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXN3O00409 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXN3O00409 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms