Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 C1QL1P1-201ENST00000568105 661 ntBASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV40A0A0B4J280 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 KRT16P1-201ENST00000399124 1418 ntBASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV40A0A0B4J280 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 KSR1P1-201ENST00000446298 240 ntBASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.02■□□□□ 0.16
TRAV40A0A0B4J280 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.02■□□□□ 0.15
TRAV40A0A0B4J280 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 BX119927.1-201ENST00000636596 1552 ntBASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 TUBB8P6-201ENST00000436895 1288 ntBASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 REXO1L10P-201ENST00000615707 1290 ntBASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.01■□□□□ 0.15
TRAV40A0A0B4J280 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms