Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 SNORA17.1-201ENST00000362945 126 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 DBIP1-201ENST00000401435 260 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AL590139.1-201ENST00000416267 400 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AC007064.3-201ENST00000422608 359 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 NANOGP9-201ENST00000439890 892 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AC234781.3-201ENST00000452540 973 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 RPS3AP53-201ENST00000454716 778 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 RPL7AP28-201ENST00000464513 571 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AC109462.1-201ENST00000491087 368 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 HMGB1P44-201ENST00000508597 572 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 HPRT1P1-201ENST00000509498 657 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AP005403.1-201ENST00000579720 229 ntBASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 SNURFL-201ENST00000309296 343 ntBASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 RN7SKP95-201ENST00000362860 303 ntBASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 RN7SKP126-201ENST00000411143 300 ntBASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 AL138878.2-201ENST00000440581 1241 ntBASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 TRY2P-201ENST00000448860 689 ntBASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 ZNF840P-201ENST00000504759 1996 ntBASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHANK3Q9BYB0 AC232271.1-201ENST00000602455 2715 ntBASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 RNA5SP487-201ENST00000410186 122 ntBASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 GAPDHP25-201ENST00000447061 1001 ntBASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 RN7SKP253-201ENST00000516424 309 ntBASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 AGGF1P7-201ENST00000562369 913 ntBASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 MIR3934-201ENST00000579806 107 ntBASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 AC090607.5-201ENST00000615692 224 ntBASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
SHANK3Q9BYB0 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 HSPA8P14-201ENST00000552265 1805 ntBASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 ATP6V1G1P7-201ENST00000415853 349 ntBASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 P2RY10P2-201ENST00000416730 913 ntBASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 AC092647.2-201ENST00000452998 253 ntBASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 TOMM20P2-201ENST00000540082 421 ntBASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 ARL1-211ENST00000551828 776 ntTSL 5 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC7.14□□□□□ -1.27
SHANK3Q9BYB0 TVP23CP2-201ENST00000571473 623 ntBASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms