Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC231657.1-201ENST00000624313 397 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RBFOX2-207ENST00000414461 1706 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 PARN-201ENST00000341484 2100 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF121-201ENST00000320451 1563 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.48
CCDC140Q96MF4 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
CCDC140Q96MF4 AC087045.3-201ENST00000623046 2468 ntBASIC5.84□□□□□ -1.48
CCDC140Q96MF4 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC5.84□□□□□ -1.48
CCDC140Q96MF4 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
CCDC140Q96MF4 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 ARNTL2-203ENST00000311001 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 HSPA8P11-201ENST00000508840 1898 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC090643.1-201ENST00000623600 3100 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC069222.1-201ENST00000608028 3360 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL031985.3-201ENST00000565390 2449 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 FUNDC2P3-201ENST00000334716 533 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RNU6-115P-201ENST00000364310 107 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC068389.3-201ENST00000373384 529 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RNU6-259P-201ENST00000383999 107 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 VIM2P-201ENST00000402383 1294 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC109780.2-201ENST00000413467 845 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RPL34P19-201ENST00000415903 342 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 HBBP1-201ENST00000433329 439 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL049646.2-201ENST00000436848 258 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC005040.1-201ENST00000437783 482 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC007790.1-201ENST00000439081 782 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC027124.1-201ENST00000440852 466 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 NANOGNBP1-201ENST00000448444 480 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RN7SL870P-201ENST00000460111 296 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC096922.1-201ENST00000461635 651 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC022730.2-201ENST00000465359 452 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 TMED11P-201ENST00000479478 690 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RPL23AP82-208ENST00000496652 1112 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RN7SKP298-201ENST00000515950 94 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 RNU6-1178P-201ENST00000516674 107 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 OR7E96P-201ENST00000530816 976 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 EIF4EBP2P2-201ENST00000563883 333 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC009118.1-201ENST00000566019 374 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC138749.2-201ENST00000566048 167 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 MTCO3P24-201ENST00000572729 782 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AP001004.1-201ENST00000582468 324 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC083760.1-201ENST00000589621 670 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 PRR13P5-201ENST00000596581 442 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL606834.2-201ENST00000602954 668 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL109618.2-201ENST00000605527 211 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AL513477.2-201ENST00000607858 568 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 U6.42-201ENST00000618440 107 ntBASIC5.83□□□□□ -1.48
CCDC140Q96MF4 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC140Q96MF4 AC018558.4-201ENST00000622153 281 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms