Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC099494.2-201ENST00000623371 978 ntBASIC3.34□□□□□ -1.88
HSPG2P98160 AC112200.1-201ENST00000625015 234 ntBASIC3.34□□□□□ -1.88
HSPG2P98160 OR7E122P-202ENST00000641144 6171 ntBASIC3.34□□□□□ -1.88
HSPG2P98160 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC3.34□□□□□ -1.88
HSPG2P98160 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HSPG2P98160 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
HSPG2P98160 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HSPG2P98160 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
HSPG2P98160 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.34□□□□□ -1.88
HSPG2P98160 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC3.34□□□□□ -1.88
HSPG2P98160 SVIL-201ENST00000355867 7586 ntAPPRIS P4 TSL 1 (best) BASIC3.34□□□□□ -1.88
HSPG2P98160 ZAN-205ENST00000613979 8669 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 AC079741.1-201ENST00000321498 212 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 RNA5SP455-201ENST00000365190 119 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 RNU4-25P-201ENST00000410569 230 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 SYK-202ENST00000375747 4908 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 USP3-201ENST00000268049 5311 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC119751.6-201ENST00000416712 186 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 AL359073.1-201ENST00000448036 403 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 RPL10P17-201ENST00000453852 316 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 RPL7AP52-201ENST00000458096 790 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC090058.1-201ENST00000498788 435 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 RN7SKP99-201ENST00000517028 307 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 IGHV1-14-201ENST00000523391 241 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC007494.1-201ENST00000562293 760 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AC093765.1-201ENST00000603758 881 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 PRDM15-203ENST00000422911 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HSPG2P98160 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC074255.1-201ENST00000511259 501 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 MIR4298-201ENST00000584380 73 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AL356218.2-201ENST00000605264 187 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 OR2M4-202ENST00000641868 5934 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HSPG2P98160 CC2D2A-202ENST00000424120 5249 ntAPPRIS P3 TSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 TRERF1-205ENST00000541110 7646 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 OR9K1P-202ENST00000641111 3217 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC3.33□□□□□ -1.88
HSPG2P98160 PARN-201ENST00000341484 2100 ntTSL 2 BASIC3.33□□□□□ -1.88
HSPG2P98160 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HSPG2P98160 U3.3-201ENST00000362986 216 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 ST13P16-201ENST00000401760 781 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AC004074.1-201ENST00000421810 1063 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 PPIAP21-201ENST00000464473 501 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC3.33□□□□□ -1.88
HSPG2P98160 AC009237.13-201ENST00000603193 276 ntBASIC3.33□□□□□ -1.88
HSPG2P98160 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC3.33□□□□□ -1.88
HSPG2P98160 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms