Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VCPP55072 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VCPP55072 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.35□□□□□ -1.39
VCPP55072 AC245096.1-201ENST00000413104 546 ntBASIC6.35□□□□□ -1.39
VCPP55072 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.35□□□□□ -1.39
VCPP55072 ZNF619P1-201ENST00000446539 752 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC073850.1-201ENST00000449243 255 ntBASIC6.35□□□□□ -1.39
VCPP55072 RN7SL727P-201ENST00000482164 296 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC108693.1-201ENST00000496068 432 ntBASIC6.35□□□□□ -1.39
VCPP55072 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.35□□□□□ -1.39
VCPP55072 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC6.35□□□□□ -1.39
VCPP55072 CDH12P4-201ENST00000517835 295 ntBASIC6.35□□□□□ -1.39
VCPP55072 CDH12P3-201ENST00000517935 295 ntBASIC6.35□□□□□ -1.39
VCPP55072 CDH12P1-201ENST00000518435 295 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.35□□□□□ -1.39
VCPP55072 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.35□□□□□ -1.39
VCPP55072 AP000648.1-201ENST00000529682 397 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.35□□□□□ -1.39
VCPP55072 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.35□□□□□ -1.39
VCPP55072 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.35□□□□□ -1.39
VCPP55072 HNRNPCP1-201ENST00000556181 766 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC091078.2-201ENST00000557145 559 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 FO393422.1-201ENST00000603908 708 ntBASIC6.35□□□□□ -1.39
VCPP55072 AL031601.1-201ENST00000605702 394 ntBASIC6.35□□□□□ -1.39
VCPP55072 AL691477.1-201ENST00000624398 162 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VCPP55072 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
VCPP55072 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
VCPP55072 AC011416.1-201ENST00000514947 1732 ntBASIC6.35□□□□□ -1.39
VCPP55072 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 MRRFP1-201ENST00000435941 1675 ntBASIC6.35□□□□□ -1.39
VCPP55072 AC012078.1-201ENST00000405035 1646 ntBASIC6.35□□□□□ -1.39
VCPP55072 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 AC027279.4-201ENST00000624371 2072 ntBASIC6.35□□□□□ -1.39
VCPP55072 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.35□□□□□ -1.39
VCPP55072 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
VCPP55072 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.35□□□□□ -1.39
VCPP55072 AC018628.1-201ENST00000624147 3819 ntBASIC6.35□□□□□ -1.39
VCPP55072 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
VCPP55072 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
VCPP55072 DNM1P47-203ENST00000571780 12667 ntBASIC6.35□□□□□ -1.39
VCPP55072 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
VCPP55072 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.34□□□□□ -1.39
VCPP55072 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.34□□□□□ -1.39
VCPP55072 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.34□□□□□ -1.39
VCPP55072 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
VCPP55072 RNA5SP375-201ENST00000362975 119 ntBASIC6.34□□□□□ -1.39
VCPP55072 FABP12P1-201ENST00000401911 322 ntBASIC6.34□□□□□ -1.39
VCPP55072 RPL37P18-201ENST00000411602 243 ntBASIC6.34□□□□□ -1.39
VCPP55072 AC021876.1-201ENST00000425959 359 ntBASIC6.34□□□□□ -1.39
VCPP55072 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.34□□□□□ -1.39
VCPP55072 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.34□□□□□ -1.39
VCPP55072 SEPT14P12-201ENST00000442280 560 ntBASIC6.34□□□□□ -1.39
VCPP55072 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC6.34□□□□□ -1.39
VCPP55072 AC073909.1-201ENST00000447112 999 ntBASIC6.34□□□□□ -1.39
VCPP55072 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.34□□□□□ -1.39
VCPP55072 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC6.34□□□□□ -1.39
VCPP55072 COPS8P2-201ENST00000473228 627 ntBASIC6.34□□□□□ -1.39
VCPP55072 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.34□□□□□ -1.39
VCPP55072 AC004815.1-201ENST00000484185 331 ntBASIC6.34□□□□□ -1.39
VCPP55072 RPS26P24-201ENST00000497656 331 ntBASIC6.34□□□□□ -1.39
VCPP55072 AC006499.3-201ENST00000506077 748 ntBASIC6.34□□□□□ -1.39
VCPP55072 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.34□□□□□ -1.39
VCPP55072 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.34□□□□□ -1.39
VCPP55072 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.34□□□□□ -1.39
VCPP55072 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.34□□□□□ -1.39
VCPP55072 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.34□□□□□ -1.39
VCPP55072 Mico1.1-201ENST00000611698 204 ntBASIC6.34□□□□□ -1.39
VCPP55072 AL031658.2-201ENST00000616850 651 ntBASIC6.34□□□□□ -1.39
VCPP55072 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
VCPP55072 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
VCPP55072 AL442128.2-201ENST00000620246 1824 ntBASIC6.34□□□□□ -1.4
VCPP55072 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.34□□□□□ -1.4
VCPP55072 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
VCPP55072 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.4
VCPP55072 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VCPP55072 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VCPP55072 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.33□□□□□ -1.4
VCPP55072 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VCPP55072 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
VCPP55072 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.33□□□□□ -1.4
VCPP55072 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.33□□□□□ -1.4
VCPP55072 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
VCPP55072 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VCPP55072 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VCPP55072 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VCPP55072 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms