Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.91□□□□□ -1.3
SMARCA1P28370 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
SMARCA1P28370 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AL121768.1-201ENST00000613917 2544 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.91□□□□□ -1.3
SMARCA1P28370 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.91□□□□□ -1.3
SMARCA1P28370 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
SMARCA1P28370 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.91□□□□□ -1.3
SMARCA1P28370 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.3
SMARCA1P28370 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.9□□□□□ -1.3
SMARCA1P28370 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.9□□□□□ -1.3
SMARCA1P28370 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
SMARCA1P28370 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC6.9□□□□□ -1.3
SMARCA1P28370 RNU1-150P-201ENST00000362491 162 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 CCNB2P1-201ENST00000399411 1150 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 LSM5-203ENST00000409782 649 ntTSL 5 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.9□□□□□ -1.3
SMARCA1P28370 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.9□□□□□ -1.3
SMARCA1P28370 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC6.9□□□□□ -1.3
SMARCA1P28370 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.9□□□□□ -1.3
SMARCA1P28370 OR9N1P-201ENST00000491296 333 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 AC008629.2-201ENST00000503783 483 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
SMARCA1P28370 OR5H7P-201ENST00000514084 930 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 Y_RNA.667-201ENST00000516212 107 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 RNA5SP438-201ENST00000516561 112 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AP001804.1-201ENST00000526868 919 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC6.9□□□□□ -1.3
SMARCA1P28370 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC6.9□□□□□ -1.3
SMARCA1P28370 AL138895.2-201ENST00000603019 178 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 AC067773.1-201ENST00000603284 1094 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 AC084036.1-201ENST00000609190 508 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 MIR6778-201ENST00000617912 73 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 AP000550.3-201ENST00000637734 379 ntBASIC6.9□□□□□ -1.3
SMARCA1P28370 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
SMARCA1P28370 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.31
SMARCA1P28370 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SMARCA1P28370 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SMARCA1P28370 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.9□□□□□ -1.31
SMARCA1P28370 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SMARCA1P28370 HSPD1P8-201ENST00000400121 1658 ntBASIC6.9□□□□□ -1.31
SMARCA1P28370 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
SMARCA1P28370 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SMARCA1P28370 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SMARCA1P28370 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC130304.1-201ENST00000622942 2385 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMARCA1P28370 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMARCA1P28370 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SMARCA1P28370 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC007068.1-201ENST00000396690 844 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.89□□□□□ -1.31
SMARCA1P28370 RPS4XP5-201ENST00000419038 768 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AL035660.1-201ENST00000422041 222 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC073508.1-201ENST00000428866 656 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.89□□□□□ -1.31
SMARCA1P28370 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC6.89□□□□□ -1.31
SMARCA1P28370 ACA64.4-201ENST00000459070 127 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 NDUFA5P5-201ENST00000468361 342 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC027338.1-201ENST00000514840 825 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMARCA1P28370 RNU6-415P-201ENST00000516252 97 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC6.89□□□□□ -1.31
SMARCA1P28370 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
SMARCA1P28370 WBP1LP3-201ENST00000523033 208 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SMARCA1P28370 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC090888.3-201ENST00000558917 509 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.89□□□□□ -1.31
SMARCA1P28370 NDUFA5P11-201ENST00000567995 343 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.89□□□□□ -1.31
SMARCA1P28370 MIR4776-2-201ENST00000580204 80 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 MIR4433B-201ENST00000581329 102 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.89□□□□□ -1.31
SMARCA1P28370 MIR132-201ENST00000591554 101 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 LINC00216-201ENST00000623548 1126 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.89□□□□□ -1.31
SMARCA1P28370 AC129915.3-201ENST00000634128 948 ntBASIC6.89□□□□□ -1.31
SMARCA1P28370 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC6.89□□□□□ -1.31
SMARCA1P28370 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
SMARCA1P28370 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SMARCA1P28370 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms