Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC015982.1-201ENST00000608113 465 ntBASIC6.45□□□□□ -1.38
BDNFP23560 AL356274.1-201ENST00000617064 410 ntBASIC6.45□□□□□ -1.38
BDNFP23560 AC245014.3-201ENST00000618589 347 ntBASIC6.45□□□□□ -1.38
BDNFP23560 AC026367.3-201ENST00000619032 590 ntBASIC6.45□□□□□ -1.38
BDNFP23560 AC096708.4-201ENST00000620563 552 ntBASIC6.45□□□□□ -1.38
BDNFP23560 AC021106.3-201ENST00000623925 531 ntBASIC6.45□□□□□ -1.38
BDNFP23560 AC116667.2-201ENST00000641075 823 ntBASIC6.45□□□□□ -1.38
BDNFP23560 AC133552.1-201ENST00000569988 4007 ntBASIC6.45□□□□□ -1.38
BDNFP23560 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BDNFP23560 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
BDNFP23560 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
BDNFP23560 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
BDNFP23560 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
BDNFP23560 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BDNFP23560 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
BDNFP23560 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.44□□□□□ -1.38
BDNFP23560 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.44□□□□□ -1.38
BDNFP23560 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
BDNFP23560 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC6.44□□□□□ -1.38
BDNFP23560 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 MT-TP-201ENST00000387461 68 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AL360271.1-201ENST00000395679 510 ntBASIC6.44□□□□□ -1.38
BDNFP23560 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 AL512504.1-201ENST00000415494 778 ntBASIC6.44□□□□□ -1.38
BDNFP23560 RPL12P12-201ENST00000424633 501 ntBASIC6.44□□□□□ -1.38
BDNFP23560 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.44□□□□□ -1.38
BDNFP23560 TRIM60P16-201ENST00000444048 694 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AL035551.1-201ENST00000446931 348 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.44□□□□□ -1.38
BDNFP23560 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.44□□□□□ -1.38
BDNFP23560 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.44□□□□□ -1.38
BDNFP23560 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.44□□□□□ -1.38
BDNFP23560 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.44□□□□□ -1.38
BDNFP23560 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC6.44□□□□□ -1.38
BDNFP23560 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.44□□□□□ -1.38
BDNFP23560 AC104997.1-201ENST00000519761 717 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AP003396.4-201ENST00000527574 265 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.44□□□□□ -1.38
BDNFP23560 RPA2P1-201ENST00000556557 721 ntBASIC6.44□□□□□ -1.38
BDNFP23560 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 OR4H6P-201ENST00000563771 921 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.44□□□□□ -1.38
BDNFP23560 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 AC020916.2-201ENST00000591242 360 ntBASIC6.44□□□□□ -1.38
BDNFP23560 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.44□□□□□ -1.38
BDNFP23560 AC108865.2-201ENST00000606881 432 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AL352984.2-202ENST00000613699 155 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 AC096861.1-201ENST00000616652 240 ntBASIC6.44□□□□□ -1.38
BDNFP23560 U1.31-201ENST00000620022 160 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AC019080.5-201ENST00000624891 757 ntBASIC6.44□□□□□ -1.38
BDNFP23560 CASC19-284ENST00000642142 1868 ntBASIC6.44□□□□□ -1.38
BDNFP23560 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.44□□□□□ -1.38
BDNFP23560 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 AC092692.1-201ENST00000623625 2595 ntBASIC6.44□□□□□ -1.38
BDNFP23560 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 AC010266.2-201ENST00000564741 3255 ntBASIC6.44□□□□□ -1.38
BDNFP23560 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.44□□□□□ -1.38
BDNFP23560 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BDNFP23560 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
BDNFP23560 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.43□□□□□ -1.38
BDNFP23560 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
BDNFP23560 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
BDNFP23560 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
BDNFP23560 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
BDNFP23560 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
BDNFP23560 RNA5SP477-201ENST00000362639 119 ntBASIC6.43□□□□□ -1.38
BDNFP23560 RNU105B-201ENST00000364478 208 ntBASIC6.43□□□□□ -1.38
BDNFP23560 RN7SKP15-201ENST00000364742 309 ntBASIC6.43□□□□□ -1.38
BDNFP23560 GSTA12P-201ENST00000402398 508 ntBASIC6.43□□□□□ -1.38
BDNFP23560 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.43□□□□□ -1.38
BDNFP23560 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
BDNFP23560 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.43□□□□□ -1.38
BDNFP23560 RPS15AP30-201ENST00000420976 390 ntBASIC6.43□□□□□ -1.38
BDNFP23560 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.43□□□□□ -1.38
BDNFP23560 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC6.43□□□□□ -1.38
BDNFP23560 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC6.43□□□□□ -1.38
BDNFP23560 PA2G4P6-201ENST00000438325 1197 ntBASIC6.43□□□□□ -1.38
BDNFP23560 RPL12P11-201ENST00000439970 501 ntBASIC6.43□□□□□ -1.38
BDNFP23560 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC6.43□□□□□ -1.38
BDNFP23560 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.43□□□□□ -1.38
BDNFP23560 AC005077.1-201ENST00000449226 375 ntBASIC6.43□□□□□ -1.38
BDNFP23560 AC037198.2-201ENST00000478845 733 ntBASIC6.43□□□□□ -1.38
BDNFP23560 AC006499.4-201ENST00000510947 694 ntBASIC6.43□□□□□ -1.38
BDNFP23560 ACTR6P1-201ENST00000514311 1104 ntBASIC6.43□□□□□ -1.38
BDNFP23560 MTHFD2P4-201ENST00000515074 1025 ntBASIC6.43□□□□□ -1.38
BDNFP23560 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
BDNFP23560 OR6M2P-201ENST00000529831 871 ntBASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms