Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.07□□□□□ -1.44
APOEP02649 SNORA70.11-201ENST00000515987 138 ntBASIC6.07□□□□□ -1.44
APOEP02649 SNORA70.13-201ENST00000516116 138 ntBASIC6.07□□□□□ -1.44
APOEP02649 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.07□□□□□ -1.44
APOEP02649 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 IGKV2-4-201ENST00000523070 340 ntBASIC6.07□□□□□ -1.44
APOEP02649 AC090424.1-201ENST00000535243 736 ntBASIC6.07□□□□□ -1.44
APOEP02649 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.07□□□□□ -1.44
APOEP02649 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.07□□□□□ -1.44
APOEP02649 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.07□□□□□ -1.44
APOEP02649 AC091078.2-201ENST00000557145 559 ntBASIC6.07□□□□□ -1.44
APOEP02649 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.07□□□□□ -1.44
APOEP02649 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.07□□□□□ -1.44
APOEP02649 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.07□□□□□ -1.44
APOEP02649 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.07□□□□□ -1.44
APOEP02649 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
APOEP02649 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.07□□□□□ -1.44
APOEP02649 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.07□□□□□ -1.44
APOEP02649 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
APOEP02649 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
APOEP02649 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.06□□□□□ -1.44
APOEP02649 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
APOEP02649 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 AL022311.1-201ENST00000623726 19416 ntBASIC6.06□□□□□ -1.44
APOEP02649 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 OR7E101P-201ENST00000400428 513 ntBASIC6.06□□□□□ -1.44
APOEP02649 LSM5-203ENST00000409782 649 ntTSL 5 BASIC6.06□□□□□ -1.44
APOEP02649 RN7SKP29-201ENST00000410957 272 ntBASIC6.06□□□□□ -1.44
APOEP02649 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
APOEP02649 AL157777.1-201ENST00000468100 304 ntBASIC6.06□□□□□ -1.44
APOEP02649 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.06□□□□□ -1.44
APOEP02649 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.06□□□□□ -1.44
APOEP02649 TRIM51DP-201ENST00000529746 596 ntBASIC6.06□□□□□ -1.44
APOEP02649 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
APOEP02649 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.06□□□□□ -1.44
APOEP02649 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.06□□□□□ -1.44
APOEP02649 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.06□□□□□ -1.44
APOEP02649 AC069542.2-201ENST00000624816 216 ntBASIC6.06□□□□□ -1.44
APOEP02649 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.06□□□□□ -1.44
APOEP02649 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.06□□□□□ -1.44
APOEP02649 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.06□□□□□ -1.44
APOEP02649 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
APOEP02649 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC6.06□□□□□ -1.44
APOEP02649 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.06□□□□□ -1.44
APOEP02649 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
APOEP02649 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
APOEP02649 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
APOEP02649 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
APOEP02649 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
APOEP02649 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
APOEP02649 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.05□□□□□ -1.44
APOEP02649 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.05□□□□□ -1.44
APOEP02649 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
APOEP02649 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.05□□□□□ -1.44
APOEP02649 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC6.05□□□□□ -1.44
APOEP02649 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
APOEP02649 NPM1P38-201ENST00000403835 865 ntBASIC6.05□□□□□ -1.44
APOEP02649 EEF1B2P8-201ENST00000414101 671 ntBASIC6.05□□□□□ -1.44
APOEP02649 MRPL53P1-201ENST00000414323 319 ntBASIC6.05□□□□□ -1.44
APOEP02649 AC019205.1-201ENST00000421830 730 ntBASIC6.05□□□□□ -1.44
APOEP02649 RPS29P14-201ENST00000431518 171 ntBASIC6.05□□□□□ -1.44
APOEP02649 AC015983.1-201ENST00000441577 373 ntBASIC6.05□□□□□ -1.44
APOEP02649 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.05□□□□□ -1.44
APOEP02649 AL445665.1-202ENST00000452436 324 ntBASIC6.05□□□□□ -1.44
APOEP02649 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.05□□□□□ -1.44
APOEP02649 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.05□□□□□ -1.44
APOEP02649 NENFP3-201ENST00000503735 313 ntBASIC6.05□□□□□ -1.44
APOEP02649 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.05□□□□□ -1.44
APOEP02649 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.05□□□□□ -1.44
APOEP02649 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
APOEP02649 AC008521.2-201ENST00000591021 259 ntBASIC6.05□□□□□ -1.44
APOEP02649 AC010487.1-201ENST00000594408 1172 ntBASIC6.05□□□□□ -1.44
APOEP02649 AC006115.2-201ENST00000596823 202 ntBASIC6.05□□□□□ -1.44
APOEP02649 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.05□□□□□ -1.44
APOEP02649 AC002069.2-201ENST00000603580 883 ntBASIC6.05□□□□□ -1.44
APOEP02649 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.05□□□□□ -1.44
APOEP02649 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.05□□□□□ -1.44
APOEP02649 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC6.05□□□□□ -1.44
APOEP02649 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
APOEP02649 AC106872.5-201ENST00000508856 1416 ntBASIC6.05□□□□□ -1.44
APOEP02649 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.05□□□□□ -1.44
APOEP02649 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.05□□□□□ -1.44
APOEP02649 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
APOEP02649 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
APOEP02649 AC091305.2-201ENST00000624049 1576 ntBASIC6.05□□□□□ -1.44
APOEP02649 AL355834.1-201ENST00000556602 3965 ntBASIC6.05□□□□□ -1.44
APOEP02649 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms