Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC4.8□□□□□ -1.64
SDCBPO00560 AL138820.1-201ENST00000617901 5305 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 AC004158.1-201ENST00000564508 4319 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AC117409.1-201ENST00000470499 1310 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SDCBPO00560 RNA5SP326-201ENST00000363209 110 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 RN7SKP186-201ENST00000365371 303 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.8□□□□□ -1.64
SDCBPO00560 U3.28-201ENST00000391249 210 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC4.8□□□□□ -1.64
SDCBPO00560 AC079809.1-201ENST00000415468 276 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AC019205.1-201ENST00000421830 730 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 ATP6V1E1P1-201ENST00000439215 681 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AMYP1-201ENST00000440059 1023 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC4.8□□□□□ -1.64
SDCBPO00560 OR7E116P-201ENST00000448529 957 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.8□□□□□ -1.64
SDCBPO00560 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC4.8□□□□□ -1.64
SDCBPO00560 RBBP4P1-201ENST00000502424 1276 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 LDHAP1-201ENST00000509421 992 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 SCARNA18.1-201ENST00000516330 83 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC4.8□□□□□ -1.64
SDCBPO00560 OR4A43P-201ENST00000532938 908 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC4.8□□□□□ -1.64
SDCBPO00560 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.8□□□□□ -1.64
SDCBPO00560 AL359091.2-201ENST00000609303 556 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 MIR6889-201ENST00000613185 59 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC4.8□□□□□ -1.64
SDCBPO00560 AC073592.6-201ENST00000624271 415 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC4.8□□□□□ -1.64
SDCBPO00560 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 GTF2IP4-201ENST00000453092 2054 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AC112198.2-201ENST00000426589 6996 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 AC027088.4-201ENST00000611559 1947 ntBASIC4.8□□□□□ -1.64
SDCBPO00560 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.8□□□□□ -1.64
SDCBPO00560 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SDCBPO00560 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
SDCBPO00560 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 LYARP1-201ENST00000436977 1501 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 RNU1-65P-201ENST00000363919 148 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 RN7SKP69-201ENST00000365390 305 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 GPS2P1-201ENST00000411761 986 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 AC009784.1-201ENST00000426484 460 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 AC126120.1-201ENST00000431082 470 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 RN7SL57P-201ENST00000493687 290 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 AL117692.1-201ENST00000494283 713 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 APOBEC3AP1-201ENST00000511396 287 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC4.79□□□□□ -1.64
SDCBPO00560 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC4.79□□□□□ -1.64
SDCBPO00560 CASP5-209ENST00000531367 879 ntTSL 5 BASIC4.79□□□□□ -1.64
SDCBPO00560 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 AC139697.1-201ENST00000548429 745 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 MYL6-213ENST00000549017 502 ntTSL 3 BASIC4.79□□□□□ -1.64
SDCBPO00560 AC026826.3-201ENST00000561747 158 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 DHFRP1-201ENST00000579682 559 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 AC108673.3-201ENST00000609183 335 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 MIR6809-201ENST00000612189 116 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 MIR6793-201ENST00000612376 63 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 AL157762.1-201ENST00000619612 415 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SDCBPO00560 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SDCBPO00560 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDCBPO00560 HSPD1P7-201ENST00000447985 1686 ntBASIC4.79□□□□□ -1.64
SDCBPO00560 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.79□□□□□ -1.64
SDCBPO00560 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.79□□□□□ -1.64
SDCBPO00560 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SDCBPO00560 AF287957.1-201ENST00000607368 1595 ntBASIC4.78□□□□□ -1.64
SDCBPO00560 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms