Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC011503.2-201ENST00000594230 1500 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC002069.2-201ENST00000603580 883 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 CYCSP1-201ENST00000604815 315 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC011374.2-201ENST00000607135 526 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 OR2BH1P-201ENST00000608850 864 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 U1.34-201ENST00000618578 162 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 MIR7854-201ENST00000620068 65 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AP000577.1-201ENST00000624366 878 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AL035425.4-201ENST00000624509 1063 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC063952.1-203ENST00000634410 658 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL596244.1-201ENST00000567068 3779 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RNA5SP308-201ENST00000362532 115 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RNU4-92P-201ENST00000363783 136 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RNA5SP27-201ENST00000363839 119 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RNU4-51P-201ENST00000364206 140 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RNA5SP140-201ENST00000364524 92 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 CASP3-203ENST00000393588 677 ntTSL 4 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RPL23AP59-201ENST00000399415 461 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL359694.1-201ENST00000403247 604 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RN7SKP296-201ENST00000411185 341 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC010385.1-201ENST00000412374 256 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 GTF2IP2-201ENST00000424290 697 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL589794.1-201ENST00000424971 390 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 OR6R1P-201ENST00000431838 940 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC092647.3-201ENST00000443044 633 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 CALM1P2-201ENST00000452941 448 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 HSPE1P22-201ENST00000456856 327 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 MRPL57P6-201ENST00000506570 309 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 MRPS5P3-201ENST00000515577 166 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 MRPS36P3-201ENST00000519284 130 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC006518.2-201ENST00000542513 940 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL109741.3-201ENST00000561748 592 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RBM22P12-201ENST00000567098 1255 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC024267.2-201ENST00000582737 417 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC015660.5-201ENST00000623238 564 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 OR1S1-201ENST00000624470 978 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 CLUHP10-201ENST00000631979 980 ntBASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.62□□□□□ -1.35
TRIM39Q9HCM9 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 CASC19-281ENST00000642118 1554 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms