Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 Y_RNA.133-201ENST00000363428 110 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 Y_RNA.146-201ENST00000363549 102 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 Y_RNA.422-201ENST00000384054 114 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL356057.3-201ENST00000402607 340 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL451061.1-201ENST00000407887 862 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 RNU2-3P-201ENST00000410144 191 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 RCAN3-203ENST00000412742 667 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 SETP9-201ENST00000423837 832 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 RPS4XP16-201ENST00000427198 791 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 TAAR7P-201ENST00000436141 242 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL450263.2-201ENST00000439400 589 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 RPL29P7-201ENST00000440227 457 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 DBIL5P2-201ENST00000443827 253 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL121877.1-201ENST00000453704 622 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL590369.1-201ENST00000455074 470 ntTSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AC233279.1-201ENST00000455300 423 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 CREM-224ENST00000468236 582 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AC015820.1-201ENST00000473882 321 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 ACTR3P3-201ENST00000480448 893 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 RN7SKP141-201ENST00000516167 338 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 MTND1P35-201ENST00000526739 508 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 RAB30-209ENST00000532548 644 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 DNAJC8P1-201ENST00000554535 372 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AL109628.1-201ENST00000556877 366 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 GLUD1P2-201ENST00000583339 201 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 MIR548AB-201ENST00000584917 84 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 GLUD1P8-201ENST00000585063 203 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AP001267.4-201ENST00000602598 545 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 OR7M1P-201ENST00000608946 533 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 MIR4278-201ENST00000636094 69 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 LINC01829-202ENST00000433133 2100 ntTSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 CDKL5-202ENST00000379996 3449 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 RNF19BPY-201ENST00000458209 1550 ntBASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 HINFP-201ENST00000350777 3163 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 NQO1-203ENST00000379047 2527 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
NPAS3Q8IXF0 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 AC107982.1-201ENST00000507171 1300 ntBASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 RSRC2-201ENST00000331738 3520 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 DDX24-211ENST00000640432 2580 ntTSL 5 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 SUPT7L-205ENST00000464789 2664 ntAPPRIS ALT1 TSL 5 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 LINC02026-201ENST00000397645 1615 ntTSL 2 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 ABCB4-202ENST00000358400 3826 ntTSL 5 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 VLDLR-AS1-201ENST00000416826 3167 ntTSL 2 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 WDR31-203ENST00000374195 3101 ntAPPRIS P3 TSL 5 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 GDNF-208ENST00000620847 3638 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 AL078621.1-201ENST00000272567 768 ntBASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 AL450313.1-201ENST00000366376 452 ntTSL 3 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 CARD17-201ENST00000375707 466 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 RPS3AP5-201ENST00000389400 821 ntBASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 AC007068.1-201ENST00000396690 844 ntBASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 NPM1P36-201ENST00000415681 835 ntBASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 LIN28AP2-201ENST00000445283 458 ntBASIC7.78□□□□□ -1.16
NPAS3Q8IXF0 OR7A15P-201ENST00000449848 1009 ntBASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms