Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 AC016745.2-201ENST00000608834 3443 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC3.35□□□□□ -1.87
HSPG2P98160 TRPS1-201ENST00000220888 5480 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 DDX10-203ENST00000526794 6707 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 AL589993.1-201ENST00000407450 2524 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 EML5-201ENST00000380664 5910 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 USP8-204ENST00000425032 3559 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 FAM96AP1-201ENST00000430879 482 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HSPG2P98160 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.35□□□□□ -1.87
HSPG2P98160 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.35□□□□□ -1.87
HSPG2P98160 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.35□□□□□ -1.87
HSPG2P98160 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 ZNRD1ASP-221ENST00000637794 1074 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 AL122126.1-201ENST00000546905 1318 ntBASIC3.35□□□□□ -1.87
HSPG2P98160 FXR1-202ENST00000357559 8711 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 ATP8A1-201ENST00000264449 8209 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 PRKG1-203ENST00000373980 6928 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 AP003119.3-201ENST00000566747 4192 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 LINC01616-201ENST00000561816 2280 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC3.34□□□□□ -1.87
HSPG2P98160 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 USP9YP3-201ENST00000434481 1766 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 DBIP1-201ENST00000401435 260 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 MIR1182-201ENST00000408363 97 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 RN7SKP151-201ENST00000410230 316 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 RN7SKP126-201ENST00000411143 300 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC3.34□□□□□ -1.87
HSPG2P98160 CASC22-202ENST00000628396 802 ntTSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 LCT-201ENST00000264162 6279 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 FAM129A-201ENST00000367511 6928 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 DIP2C-202ENST00000381496 7749 ntTSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC3.34□□□□□ -1.87
HSPG2P98160 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC3.34□□□□□ -1.87
HSPG2P98160 OR7E25P-202ENST00000641088 5937 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 NCOA4P3-201ENST00000513203 1877 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AC006213.6-201ENST00000623722 4179 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 RBPJP2-201ENST00000618187 1444 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 EEA1-201ENST00000322349 9875 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HSPG2P98160 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.34□□□□□ -1.87
HSPG2P98160 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC3.34□□□□□ -1.87
HSPG2P98160 DDX39BP1-205ENST00000422507 192 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC3.34□□□□□ -1.87
HSPG2P98160 RSU1P1-201ENST00000453416 441 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AC140172.1-201ENST00000502928 141 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 OR5M2P-201ENST00000529003 936 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AC023575.1-201ENST00000580510 358 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AC011487.3-201ENST00000593607 453 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AC009597.2-201ENST00000604659 592 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.34□□□□□ -1.87
HSPG2P98160 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 ZNF776-201ENST00000317178 5292 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 EIF5B-201ENST00000289371 5777 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 ACAN-201ENST00000352105 7526 ntTSL 5 BASIC3.34□□□□□ -1.87
HSPG2P98160 AP004607.3-201ENST00000530354 3915 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 AC114774.1-201ENST00000507410 1770 ntBASIC3.34□□□□□ -1.87
HSPG2P98160 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HSPG2P98160 POT1-202ENST00000393329 3950 ntTSL 5 BASIC3.34□□□□□ -1.88
HSPG2P98160 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
HSPG2P98160 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC3.34□□□□□ -1.88
HSPG2P98160 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC3.34□□□□□ -1.88
HSPG2P98160 AL133230.1-201ENST00000431019 4587 ntTSL 2 BASIC3.34□□□□□ -1.88
HSPG2P98160 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HSPG2P98160 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
HSPG2P98160 RNU1-85P-201ENST00000364127 164 ntBASIC3.34□□□□□ -1.88
HSPG2P98160 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC3.34□□□□□ -1.88
HSPG2P98160 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HSPG2P98160 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC3.34□□□□□ -1.88
HSPG2P98160 AC005377.1-201ENST00000605126 456 ntBASIC3.34□□□□□ -1.88
HSPG2P98160 NANOGP3-201ENST00000605855 286 ntBASIC3.34□□□□□ -1.88
HSPG2P98160 MIR8089-201ENST00000620165 82 ntBASIC3.34□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms