Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 AP004607.5-201ENST00000532034 217 ntBASIC6.62□□□□□ -1.35
RNF4P78317 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 AC044913.1-201ENST00000557200 430 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 EIF1P4-201ENST00000572664 335 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 AC010327.2-201ENST00000587647 488 ntBASIC6.62□□□□□ -1.35
RNF4P78317 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 AC068790.7-201ENST00000602347 528 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AC122710.3-201ENST00000606566 541 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AL021368.3-201ENST00000607119 578 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AL391497.1-201ENST00000608671 547 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AP000238.1-201ENST00000608759 426 ntBASIC6.62□□□□□ -1.35
RNF4P78317 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 AC087241.4-201ENST00000612441 480 ntBASIC6.62□□□□□ -1.35
RNF4P78317 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC6.62□□□□□ -1.35
RNF4P78317 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 AC099654.13-201ENST00000639774 207 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AL139254.2-202ENST00000641937 1156 ntBASIC6.62□□□□□ -1.35
RNF4P78317 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 AC016251.2-201ENST00000623393 3089 ntBASIC6.62□□□□□ -1.35
RNF4P78317 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 AP005901.5-201ENST00000545779 1796 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AL078595.2-201ENST00000605309 1780 ntBASIC6.62□□□□□ -1.35
RNF4P78317 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC6.61□□□□□ -1.35
RNF4P78317 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
RNF4P78317 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
RNF4P78317 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
RNF4P78317 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 TPTE2P2-201ENST00000403471 1466 ntBASIC6.61□□□□□ -1.35
RNF4P78317 NF1P8-201ENST00000415351 1461 ntBASIC6.61□□□□□ -1.35
RNF4P78317 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
RNF4P78317 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 LCOR-201ENST00000286067 4542 ntBASIC6.61□□□□□ -1.35
RNF4P78317 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
RNF4P78317 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
RNF4P78317 U3.4-201ENST00000363352 213 ntBASIC6.61□□□□□ -1.35
RNF4P78317 RNA5SP114-201ENST00000363780 113 ntBASIC6.61□□□□□ -1.35
RNF4P78317 RN7SKP107-201ENST00000364157 290 ntBASIC6.61□□□□□ -1.35
RNF4P78317 Y_RNA.359-201ENST00000365498 102 ntBASIC6.61□□□□□ -1.35
RNF4P78317 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
RNF4P78317 RNU6-316P-201ENST00000391027 107 ntBASIC6.61□□□□□ -1.35
RNF4P78317 AL035419.1-201ENST00000397037 564 ntBASIC6.61□□□□□ -1.35
RNF4P78317 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.61□□□□□ -1.35
RNF4P78317 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 VDAC1P10-201ENST00000416715 891 ntBASIC6.61□□□□□ -1.35
RNF4P78317 RPS7P12-201ENST00000422385 582 ntBASIC6.61□□□□□ -1.35
RNF4P78317 AL022400.1-201ENST00000423946 935 ntBASIC6.61□□□□□ -1.35
RNF4P78317 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC6.61□□□□□ -1.35
RNF4P78317 FTLP17-201ENST00000432567 525 ntBASIC6.61□□□□□ -1.35
RNF4P78317 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC6.61□□□□□ -1.35
RNF4P78317 RPS7P4-201ENST00000444127 582 ntBASIC6.61□□□□□ -1.35
RNF4P78317 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC6.61□□□□□ -1.35
RNF4P78317 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC6.61□□□□□ -1.35
RNF4P78317 SNORA81.1-201ENST00000458922 177 ntBASIC6.61□□□□□ -1.35
RNF4P78317 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC6.61□□□□□ -1.35
RNF4P78317 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC6.61□□□□□ -1.35
RNF4P78317 RPSAP48-201ENST00000466509 889 ntBASIC6.61□□□□□ -1.35
RNF4P78317 RPL7P1-201ENST00000468161 747 ntBASIC6.61□□□□□ -1.35
RNF4P78317 RPL7P9-201ENST00000468715 747 ntBASIC6.61□□□□□ -1.35
RNF4P78317 NCOR1P1-202ENST00000486162 291 ntBASIC6.61□□□□□ -1.35
RNF4P78317 AL591122.1-201ENST00000487348 492 ntBASIC6.61□□□□□ -1.35
RNF4P78317 RPL21P42-201ENST00000488408 464 ntBASIC6.61□□□□□ -1.35
RNF4P78317 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC6.61□□□□□ -1.35
RNF4P78317 AC105391.1-201ENST00000503155 1045 ntBASIC6.61□□□□□ -1.35
RNF4P78317 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC6.61□□□□□ -1.35
RNF4P78317 CDH12P2-201ENST00000504393 298 ntBASIC6.61□□□□□ -1.35
RNF4P78317 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
RNF4P78317 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
RNF4P78317 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC6.61□□□□□ -1.35
RNF4P78317 HSPE1P23-201ENST00000509838 286 ntBASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms