Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
MSX1P28360 AMELY-202ENST00000383036 621 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 Y_RNA.598-201ENST00000410480 95 ntBASIC7.23□□□□□ -1.25
MSX1P28360 RN7SKP59-201ENST00000410520 314 ntBASIC7.23□□□□□ -1.25
MSX1P28360 RNU2-42P-201ENST00000410697 113 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 MTND3P17-201ENST00000416968 344 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC7.23□□□□□ -1.25
MSX1P28360 B3GALNT1P1-201ENST00000420569 975 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC006065.1-201ENST00000422539 802 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 EEF1A1P27-201ENST00000429983 1135 ntBASIC7.23□□□□□ -1.25
MSX1P28360 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 RPL22P17-201ENST00000438729 315 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 HMGB3P9-201ENST00000441799 583 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AL157414.2-201ENST00000442780 377 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.23□□□□□ -1.25
MSX1P28360 RPL7AP52-201ENST00000458096 790 ntBASIC7.23□□□□□ -1.25
MSX1P28360 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 RN7SL201P-201ENST00000482306 296 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC006387.1-203ENST00000494849 342 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 EIF3LP3-201ENST00000495197 822 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC021491.1-201ENST00000502300 349 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 AC111198.1-201ENST00000505575 606 ntTSL 4 BASIC7.23□□□□□ -1.25
MSX1P28360 NR3C2-207ENST00000511528 2967 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 NTAN1P2-201ENST00000515730 940 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC7.23□□□□□ -1.25
MSX1P28360 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC7.23□□□□□ -1.25
MSX1P28360 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC7.23□□□□□ -1.25
MSX1P28360 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 AC025678.1-201ENST00000567861 338 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC027688.2-201ENST00000569009 511 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 AC130456.5-201ENST00000569345 510 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC7.23□□□□□ -1.25
MSX1P28360 LINC01198-208ENST00000599175 560 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 AL035413.2-201ENST00000604801 525 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC106900.2-201ENST00000604994 317 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 AC008250.2-201ENST00000615261 205 ntBASIC7.23□□□□□ -1.25
MSX1P28360 LZTS1-204ENST00000616228 231 ntTSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 ZNF710-AS1-202ENST00000620791 2133 ntBASIC7.23□□□□□ -1.25
MSX1P28360 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 CLUHP10-201ENST00000631979 980 ntBASIC7.23□□□□□ -1.25
MSX1P28360 CLEC19A-205ENST00000636231 561 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 OR4G11P-202ENST00000642116 1414 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AL133467.3-203ENST00000461160 3574 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 MT-RNR2-201ENST00000387347 1559 ntBASIC7.23□□□□□ -1.25
MSX1P28360 AC011447.7-201ENST00000624228 1590 ntBASIC7.23□□□□□ -1.25
MSX1P28360 ZNF878-201ENST00000547628 1734 ntAPPRIS P1 TSL 3 BASIC7.23□□□□□ -1.25
MSX1P28360 AC016027.2-201ENST00000441167 2493 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 PRICKLE2-AS3-201ENST00000473434 2496 ntTSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 COL21A1-212ENST00000535941 3369 ntAPPRIS ALT1 TSL 5 BASIC7.23□□□□□ -1.25
MSX1P28360 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 WASF5P-205ENST00000428639 1455 ntBASIC7.23□□□□□ -1.25
MSX1P28360 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 MTRF1-202ENST00000379477 1948 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
MSX1P28360 GRIA2-201ENST00000264426 3445 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 ZNF613-201ENST00000293471 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
MSX1P28360 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 TNS4-201ENST00000254051 4067 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 CTAGE3P-201ENST00000454280 2404 ntBASIC7.22□□□□□ -1.25
MSX1P28360 XRCC6P2-201ENST00000457831 1822 ntBASIC7.22□□□□□ -1.25
MSX1P28360 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC7.22□□□□□ -1.25
MSX1P28360 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC7.22□□□□□ -1.25
MSX1P28360 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 TMEM217-201ENST00000336655 1546 ntAPPRIS P3 TSL 2 BASIC7.22□□□□□ -1.25
MSX1P28360 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
MSX1P28360 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 LUARIS-201ENST00000436105 2916 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC7.22□□□□□ -1.25
MSX1P28360 FANCL-203ENST00000403295 1576 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 NLRP14-201ENST00000299481 3628 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
MSX1P28360 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
MSX1P28360 NAP1L4P1-201ENST00000319092 1157 ntBASIC7.22□□□□□ -1.25
MSX1P28360 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSX1P28360 RNU6-433P-201ENST00000363216 104 ntBASIC7.22□□□□□ -1.25
MSX1P28360 RNU5D-1-201ENST00000363299 116 ntBASIC7.22□□□□□ -1.25
MSX1P28360 MXI1-204ENST00000369612 879 ntTSL 3 BASIC7.22□□□□□ -1.25
MSX1P28360 RNA5SP185-201ENST00000390963 114 ntBASIC7.22□□□□□ -1.25
MSX1P28360 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
MSX1P28360 MIR1284-201ENST00000408337 120 ntBASIC7.22□□□□□ -1.25
MSX1P28360 IFNA12P-201ENST00000413147 571 ntBASIC7.22□□□□□ -1.25
MSX1P28360 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC7.22□□□□□ -1.25
MSX1P28360 AL035410.1-201ENST00000427409 427 ntBASIC7.22□□□□□ -1.25
MSX1P28360 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms