Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
COL4A1P02462 RN7SKP115-201ENST00000363177 317 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.7□□□□□ -1.34
COL4A1P02462 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL4A1P02462 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL4A1P02462 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC6.7□□□□□ -1.34
COL4A1P02462 FAM96AP1-201ENST00000430879 482 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.7□□□□□ -1.34
COL4A1P02462 AC092647.2-201ENST00000452998 253 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 DNAJB5P1-201ENST00000454004 806 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 RPL37AP8-201ENST00000494116 276 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC6.7□□□□□ -1.34
COL4A1P02462 HMGB1P40-201ENST00000525121 540 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.7□□□□□ -1.34
COL4A1P02462 OR5AM1P-201ENST00000532136 1032 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
COL4A1P02462 MIR7703-201ENST00000620784 77 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.7□□□□□ -1.34
COL4A1P02462 SAMMSON-209ENST00000641222 1100 ntBASIC6.7□□□□□ -1.34
COL4A1P02462 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC6.7□□□□□ -1.34
COL4A1P02462 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL4A1P02462 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
COL4A1P02462 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL4A1P02462 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL4A1P02462 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.7□□□□□ -1.34
COL4A1P02462 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.69□□□□□ -1.34
COL4A1P02462 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 RNA5SP443-201ENST00000363083 132 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 SNORA67-201ENST00000384423 137 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 TMEM183AP1-205ENST00000432739 290 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC6.69□□□□□ -1.34
COL4A1P02462 AL672138.1-201ENST00000450604 1015 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 RPL7P39-201ENST00000481157 744 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 RN7SL447P-201ENST00000494711 245 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.69□□□□□ -1.34
COL4A1P02462 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC6.69□□□□□ -1.34
COL4A1P02462 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.69□□□□□ -1.34
COL4A1P02462 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.69□□□□□ -1.34
COL4A1P02462 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.69□□□□□ -1.34
COL4A1P02462 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 AC005225.5-201ENST00000623547 2225 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 AC002090.1-201ENST00000625000 2138 ntBASIC6.69□□□□□ -1.34
COL4A1P02462 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL4A1P02462 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.69□□□□□ -1.34
COL4A1P02462 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.69□□□□□ -1.34
COL4A1P02462 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
COL4A1P02462 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.68□□□□□ -1.34
COL4A1P02462 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.68□□□□□ -1.34
COL4A1P02462 RNU4-4P-201ENST00000364588 130 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 VN1R21P-201ENST00000426703 765 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.68□□□□□ -1.34
COL4A1P02462 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.68□□□□□ -1.34
COL4A1P02462 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.68□□□□□ -1.34
COL4A1P02462 AC079080.1-201ENST00000479841 822 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 RPS23P1-201ENST00000491662 432 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 HMGB1P44-201ENST00000508597 572 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AC147055.3-201ENST00000510547 851 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 MTND6P2-201ENST00000512226 524 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 PMS2P3-207ENST00000529061 717 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AL163952.1-202ENST00000569625 600 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AL627230.1-201ENST00000613077 211 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AL591926.8-201ENST00000616876 211 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.68□□□□□ -1.34
COL4A1P02462 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.68□□□□□ -1.34
COL4A1P02462 AL078621.3-201ENST00000623707 2042 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.68□□□□□ -1.34
COL4A1P02462 SNORD1C-201ENST00000363315 78 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC6.68□□□□□ -1.34
COL4A1P02462 RNU1-136P-201ENST00000384181 164 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
COL4A1P02462 CRIP1P1-201ENST00000427567 185 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.68□□□□□ -1.34
COL4A1P02462 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.68□□□□□ -1.34
COL4A1P02462 AC105233.1-201ENST00000498840 781 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.68□□□□□ -1.34
COL4A1P02462 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.68□□□□□ -1.34
COL4A1P02462 AL353729.2-201ENST00000605859 1249 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 FAM25E-202ENST00000608562 189 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 AC068769.1-201ENST00000474767 2426 ntBASIC6.68□□□□□ -1.34
COL4A1P02462 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL4A1P02462 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL4A1P02462 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL4A1P02462 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
COL4A1P02462 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC6.67□□□□□ -1.34
COL4A1P02462 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.67□□□□□ -1.34
COL4A1P02462 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms