Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC114324.2-202ENST00000503812 134 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC095052.1-201ENST00000509955 863 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 ASB8-207ENST00000536953 923 ntTSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC092375.1-201ENST00000550410 637 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC092718.4-201ENST00000566639 716 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC004232.1-201ENST00000571388 208 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC069304.3-201ENST00000603938 1084 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC064807.4-201ENST00000607201 407 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AP004607.9-201ENST00000618202 316 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AL158062.1-201ENST00000619632 745 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC099654.15-201ENST00000639802 509 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC090181.3-201ENST00000624777 1514 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AL139384.2-201ENST00000613809 3590 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 PABPC1P8-201ENST00000452851 2086 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 OFD1P17-201ENST00000437639 3018 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 MIR551B-201ENST00000384984 96 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC012078.1-201ENST00000405035 1646 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 UBTFL2-201ENST00000411859 1191 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AL590806.1-201ENST00000415818 853 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LINC01347-201ENST00000417964 355 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 GTF2IP14-201ENST00000441415 586 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AL445991.1-201ENST00000450381 475 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 OTX2P1-201ENST00000450956 354 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AL034369.1-201ENST00000453808 477 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 CEACAMP11-201ENST00000455211 583 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AKR1D1P1-201ENST00000457236 936 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC019084.1-201ENST00000457337 432 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC099340.1-201ENST00000475247 599 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 H3F3AP5-201ENST00000475267 429 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC098583.1-201ENST00000480875 255 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC017007.4-201ENST00000503353 1352 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 OR52H2P-201ENST00000514607 902 ntBASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC6.63□□□□□ -1.35
TRIM39Q9HCM9 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms