Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL606490.8-201ENST00000441624 319 ntBASIC7.26□□□□□ -1.25
COL18A1P39060 AC137627.1-201ENST00000545761 289 ntBASIC7.26□□□□□ -1.25
COL18A1P39060 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC7.26□□□□□ -1.25
COL18A1P39060 HIRAP1-201ENST00000605318 787 ntBASIC7.26□□□□□ -1.25
COL18A1P39060 AL731566.2-201ENST00000618971 317 ntBASIC7.26□□□□□ -1.25
COL18A1P39060 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL18A1P39060 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL18A1P39060 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC7.26□□□□□ -1.25
COL18A1P39060 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL18A1P39060 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL18A1P39060 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
COL18A1P39060 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL18A1P39060 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC7.26□□□□□ -1.25
COL18A1P39060 AL590004.4-201ENST00000566733 7060 ntBASIC7.26□□□□□ -1.25
COL18A1P39060 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL18A1P39060 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL18A1P39060 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC7.26□□□□□ -1.25
COL18A1P39060 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
COL18A1P39060 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.26□□□□□ -1.25
COL18A1P39060 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC7.25□□□□□ -1.25
COL18A1P39060 AC211486.3-201ENST00000412694 621 ntBASIC7.25□□□□□ -1.25
COL18A1P39060 ATP6V1G1P7-201ENST00000415853 349 ntBASIC7.25□□□□□ -1.25
COL18A1P39060 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC7.25□□□□□ -1.25
COL18A1P39060 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC7.25□□□□□ -1.25
COL18A1P39060 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC7.25□□□□□ -1.25
COL18A1P39060 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC7.25□□□□□ -1.25
COL18A1P39060 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 CAST-222ENST00000508579 1758 ntTSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 ERG-202ENST00000398897 4651 ntTSL 5 BASIC7.25□□□□□ -1.25
COL18A1P39060 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 RAB28P1-201ENST00000411517 641 ntBASIC7.25□□□□□ -1.25
COL18A1P39060 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC7.25□□□□□ -1.25
COL18A1P39060 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC7.25□□□□□ -1.25
COL18A1P39060 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC7.25□□□□□ -1.25
COL18A1P39060 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 RPS3AP38-201ENST00000435889 763 ntBASIC7.25□□□□□ -1.25
COL18A1P39060 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC7.25□□□□□ -1.25
COL18A1P39060 RPS3AP53-201ENST00000454716 778 ntBASIC7.25□□□□□ -1.25
COL18A1P39060 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC7.25□□□□□ -1.25
COL18A1P39060 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
COL18A1P39060 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
COL18A1P39060 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC7.25□□□□□ -1.25
COL18A1P39060 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
COL18A1P39060 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL18A1P39060 HSPD1P7-201ENST00000447985 1686 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
COL18A1P39060 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
COL18A1P39060 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
COL18A1P39060 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 WBP11P1-201ENST00000562560 1931 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 USP24P1-201ENST00000433802 779 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 MEMO1P4-201ENST00000453590 386 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC7.24□□□□□ -1.25
COL18A1P39060 MGST2-204ENST00000506797 634 ntTSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 MTND6P2-201ENST00000512226 524 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 AL671862.1-201ENST00000515851 349 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 IGHVIII-13-1-201ENST00000517613 291 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 BRD9P1-201ENST00000529855 560 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC7.24□□□□□ -1.25
COL18A1P39060 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC7.24□□□□□ -1.25
COL18A1P39060 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC7.24□□□□□ -1.25
COL18A1P39060 AC011447.4-201ENST00000587562 111 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC7.24□□□□□ -1.25
COL18A1P39060 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC7.24□□□□□ -1.25
COL18A1P39060 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 INTS6P1-201ENST00000504674 2530 ntBASIC7.24□□□□□ -1.25
COL18A1P39060 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL18A1P39060 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms