Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.79□□□□□ -1.32
BRCA1P38398 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.79□□□□□ -1.32
BRCA1P38398 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 MFSD8-239ENST00000641590 2479 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
BRCA1P38398 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
BRCA1P38398 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
BRCA1P38398 SNORA51.8-201ENST00000384234 132 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 C4BPAP2-201ENST00000428434 478 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.79□□□□□ -1.32
BRCA1P38398 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.79□□□□□ -1.32
BRCA1P38398 RN7SL352P-201ENST00000466002 277 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 HMGB1P44-201ENST00000508597 572 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 C1GALT1P3-201ENST00000522049 819 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 AC021006.3-201ENST00000530771 192 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC6.79□□□□□ -1.32
BRCA1P38398 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.79□□□□□ -1.32
BRCA1P38398 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.79□□□□□ -1.32
BRCA1P38398 AL049779.3-201ENST00000557141 606 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 DPPA3P2-202ENST00000557188 1219 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.79□□□□□ -1.32
BRCA1P38398 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.79□□□□□ -1.32
BRCA1P38398 AC093799.2-201ENST00000610062 578 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.79□□□□□ -1.32
BRCA1P38398 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.79□□□□□ -1.32
BRCA1P38398 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
BRCA1P38398 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.78□□□□□ -1.32
BRCA1P38398 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.78□□□□□ -1.32
BRCA1P38398 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
BRCA1P38398 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
BRCA1P38398 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.78□□□□□ -1.32
BRCA1P38398 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC6.78□□□□□ -1.32
BRCA1P38398 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.78□□□□□ -1.32
BRCA1P38398 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.78□□□□□ -1.32
BRCA1P38398 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.78□□□□□ -1.32
BRCA1P38398 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC6.78□□□□□ -1.32
BRCA1P38398 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6.78□□□□□ -1.32
BRCA1P38398 AC073581.1-201ENST00000519036 575 ntBASIC6.78□□□□□ -1.32
BRCA1P38398 TPM3P3-201ENST00000521343 354 ntBASIC6.78□□□□□ -1.32
BRCA1P38398 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.78□□□□□ -1.32
BRCA1P38398 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.78□□□□□ -1.32
BRCA1P38398 AC119674.1-213ENST00000641177 1386 ntBASIC6.78□□□□□ -1.32
BRCA1P38398 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.78□□□□□ -1.32
BRCA1P38398 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
BRCA1P38398 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
BRCA1P38398 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC6.77□□□□□ -1.32
BRCA1P38398 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
BRCA1P38398 RNA5SP123-201ENST00000363244 119 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 ATP6V1G1P7-201ENST00000415853 349 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 GAPDHP25-201ENST00000447061 1001 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 AC073264.2-201ENST00000448886 166 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 NUTF2P7-201ENST00000453086 375 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.77□□□□□ -1.33
BRCA1P38398 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.77□□□□□ -1.33
BRCA1P38398 AC092490.3-201ENST00000545370 572 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.77□□□□□ -1.33
BRCA1P38398 AC011447.4-201ENST00000587562 111 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.77□□□□□ -1.33
BRCA1P38398 AC073869.10-201ENST00000642016 354 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
BRCA1P38398 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 HNRNPA1P54-201ENST00000411857 9714 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
BRCA1P38398 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.77□□□□□ -1.33
BRCA1P38398 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.77□□□□□ -1.33
BRCA1P38398 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
BRCA1P38398 AL121768.1-201ENST00000613917 2544 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
BRCA1P38398 AL034546.1-201ENST00000623740 3693 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 DDX39BP1-205ENST00000422507 192 ntBASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms