Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC6.95□□□□□ -1.3
SMARCA1P28370 RN7SKP238-201ENST00000516483 249 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 NPM1P52-201ENST00000518264 846 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AP003080.1-202ENST00000526526 915 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.95□□□□□ -1.3
SMARCA1P28370 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.95□□□□□ -1.3
SMARCA1P28370 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 MIR6071-201ENST00000616741 78 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AL590410.1-201ENST00000617925 333 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
SMARCA1P28370 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 SAMMSON-210ENST00000641260 1308 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 AP000432.2-201ENST00000624164 2048 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.94□□□□□ -1.3
SMARCA1P28370 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 AL022323.4-201ENST00000623980 13120 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.94□□□□□ -1.3
SMARCA1P28370 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 OR10R3P-201ENST00000361688 942 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 AL355143.1-201ENST00000407101 841 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC6.94□□□□□ -1.3
SMARCA1P28370 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 MTND4LP14-201ENST00000429447 288 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC6.94□□□□□ -1.3
SMARCA1P28370 CUBNP2-201ENST00000443534 1139 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 AC016687.1-201ENST00000482574 353 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.94□□□□□ -1.3
SMARCA1P28370 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.94□□□□□ -1.3
SMARCA1P28370 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.94□□□□□ -1.3
SMARCA1P28370 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
SMARCA1P28370 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.94□□□□□ -1.3
SMARCA1P28370 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.94□□□□□ -1.3
SMARCA1P28370 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.94□□□□□ -1.3
SMARCA1P28370 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC6.94□□□□□ -1.3
SMARCA1P28370 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 RPAP2P1-201ENST00000603626 1168 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 AL671309.1-201ENST00000603750 544 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC6.94□□□□□ -1.3
SMARCA1P28370 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.94□□□□□ -1.3
SMARCA1P28370 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.94□□□□□ -1.3
SMARCA1P28370 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
SMARCA1P28370 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
SMARCA1P28370 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SMARCA1P28370 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.93□□□□□ -1.3
SMARCA1P28370 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 RNA5SP273-201ENST00000362484 113 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 RNA5SP477-201ENST00000362639 119 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 SUGT1P2-201ENST00000379452 992 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 RN7SKP240-201ENST00000410583 375 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC6.93□□□□□ -1.3
SMARCA1P28370 AL354692.1-201ENST00000423044 315 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AC017019.1-201ENST00000426129 261 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AL445928.1-201ENST00000435545 222 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 AL512605.1-202ENST00000441919 381 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 RPS7P3-201ENST00000443360 580 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 RPL5P10-201ENST00000445207 894 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AL359955.2-201ENST00000445380 353 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 MTND6P32-201ENST00000457611 483 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AC104164.1-201ENST00000460282 590 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AL122020.1-201ENST00000472287 459 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 RPS26P24-201ENST00000497656 331 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.93□□□□□ -1.3
SMARCA1P28370 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 NANOGNBP2-201ENST00000544753 553 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC6.93□□□□□ -1.3
SMARCA1P28370 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms