Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.64□□□□□ -1.51
COL6A3P12111 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.64□□□□□ -1.51
COL6A3P12111 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A3P12111 AC023575.1-201ENST00000580510 358 ntBASIC5.64□□□□□ -1.51
COL6A3P12111 AC108751.5-201ENST00000492880 1336 ntBASIC5.64□□□□□ -1.51
COL6A3P12111 WDR36-203ENST00000506538 7048 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A3P12111 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A3P12111 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.64□□□□□ -1.51
COL6A3P12111 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A3P12111 COL12A1-201ENST00000322507 11723 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 PAX5-201ENST00000358127 8615 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 ST3GAL1-201ENST00000399640 6764 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 AL590240.2-201ENST00000413370 894 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 AC245047.5-201ENST00000437312 556 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A3P12111 RPL7L1P8-201ENST00000469911 741 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 AC107016.1-201ENST00000550463 337 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 AC090607.5-201ENST00000615692 224 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.63□□□□□ -1.51
COL6A3P12111 DYNC1I2P1-201ENST00000435916 1838 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 DISP1-201ENST00000284476 4762 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A3P12111 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL6A3P12111 RN7SKP280-201ENST00000364196 304 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A3P12111 RPL23AP1-201ENST00000428990 471 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A3P12111 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A3P12111 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A3P12111 AC068831.4-201ENST00000556118 109 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A3P12111 AC022726.2-201ENST00000634673 547 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
COL6A3P12111 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 ZNF286A-221ENST00000593105 5222 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A3P12111 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 TXNL1-201ENST00000217515 6894 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 MSL3P1-202ENST00000440028 1468 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 CCDC85C-201ENST00000380243 16393 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A3P12111 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 PTTG3P-201ENST00000521862 606 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 AC069200.1-201ENST00000609511 323 ntBASIC5.63□□□□□ -1.51
COL6A3P12111 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A3P12111 WDR31-202ENST00000374193 4878 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A3P12111 SLC30A8-201ENST00000427715 5430 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A3P12111 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL6A3P12111 SALL1-201ENST00000251020 5146 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL6A3P12111 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 RNU1-146P-201ENST00000364015 165 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 ST13P16-201ENST00000401760 781 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A3P12111 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A3P12111 MIR3667-201ENST00000581025 74 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 AC020915.5-201ENST00000596836 964 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 AL021368.3-201ENST00000607119 578 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 ZBTB21-203ENST00000398499 5806 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.62□□□□□ -1.51
COL6A3P12111 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL6A3P12111 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL6A3P12111 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
COL6A3P12111 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 TENM2-203ENST00000518659 8550 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL6A3P12111 AMZ2P2-201ENST00000406819 1057 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 DNAJA1P6-201ENST00000437347 354 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 RPL7AP52-201ENST00000458096 790 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.62□□□□□ -1.51
COL6A3P12111 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.62□□□□□ -1.51
COL6A3P12111 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A3P12111 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A3P12111 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL6A3P12111 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.62□□□□□ -1.51
COL6A3P12111 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 NUP210L-203ENST00000368559 5889 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
COL6A3P12111 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 AC010928.1-201ENST00000592477 1447 ntBASIC5.62□□□□□ -1.51
COL6A3P12111 COL25A1-209ENST00000622134 4819 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms